BtaEX0038825 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004024 | UBE2Q2
Description
Bos taurus ubiquitin-conjugating enzyme E2Q family member 2 (UBE2Q2), mRNA. [Source:RefSeq mRNA;Acc:NM_001075530]
Coordinates
chr21:31660369-31671328:+
Coord C1 exon
chr21:31660369-31660470
Coord A exon
chr21:31664847-31664951
Coord C2 exon
chr21:31671272-31671328
Length
105 bp
Sequences
Splice sites
3' ss Seq
TACTGAAATGTGTTTTGTAGCTT
3' ss Score
5.04
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
GAATCTTATCCATCTTCTTCACCAATATGGTTTGTGGACTCTGATGATCCAAACCTGACTTCAGTTCTGGAACGTCTCGAAGACACTAAGAACAACAATTCG
Seq A exon
CTTCGTCAGCAATTGAAGTGGTTGATATGTGAACTCTGCAGATTATATAACCTTCCTAAGCACCTGGATGTTGAGATGCTAGATCAACCACTACCCACGGGTCAG
Seq C2 exon
AATGGGACAACAGAAGAGGTGACTTCAGAAGAGGAGGAAGAGGAAGAGATGGCTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004024_MULTIEX1-3/12=2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.397 A=0.314 C2=1.000
Domain overlap (PFAM):
C1:
PF0577317=RWD=FE(25.4=100)
A:
PF0577317=RWD=PD(17.6=60.0)
C2:
PF0577317=RWD=FE(13.8=100)
Main Inclusion Isoform:
ENSBTAT00000005257fB7539
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATCTTATCCATCTTCTTCACCAAT
R:
GCCATCTCTTCCTCTTCCTCCT
Band lengths:
155-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development