HsaEX0068786 @ hg19
Exon Skipping
Gene
ENSG00000140367 | UBE2Q2
Description
ubiquitin-conjugating enzyme E2Q family member 2 [Source:HGNC Symbol;Acc:19248]
Coordinates
chr15:76146727-76161351:+
Coord C1 exon
chr15:76146727-76146828
Coord A exon
chr15:76152219-76152323
Coord C2 exon
chr15:76161292-76161351
Length
105 bp
Sequences
Splice sites
3' ss Seq
TACTGAAATGTGTTTTGTAGCTT
3' ss Score
5.04
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
GAATCCTATCCATCTTCTTCACCGATATGGTTTGTGGATTCTGAAGACCCAAATCTGACATCAGTTCTGGAACGTCTAGAAGATACTAAGAACAACAATTTG
Seq A exon
CTTCGTCAGCAATTGAAGTGGTTGATATGTGAACTCTGCAGTTTATATAACCTTCCTAAGCACCTGGATGTTGAGATGCTAGATCAACCACTACCCACGGGTCAG
Seq C2 exon
AATGGGACAACAGAAGAAGTGACTTCAGAAGAAGAGGAAGAAGAAGAAGAGATGGCTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000140367-'3-4,'3-3,4-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.191 A=0.286 C2=1.000
Domain overlap (PFAM):
C1:
PF0577317=RWD=FE(28.4=100)
A:
PF0577317=RWD=PD(18.1=60.0)
C2:
PF0577317=RWD=FE(15.4=100)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATCCTATCCATCTTCTTCACCGA
R:
TTCAGCCATCTCTTCTTCTTCTTCC
Band lengths:
162-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)