HsaEX0068786 @ hg38
Exon Skipping
Gene
ENSG00000140367 | UBE2Q2
Description
ubiquitin conjugating enzyme E2 Q2 [Source:HGNC Symbol;Acc:HGNC:19248]
Coordinates
chr15:75854386-75869010:+
Coord C1 exon
chr15:75854386-75854487
Coord A exon
chr15:75859878-75859982
Coord C2 exon
chr15:75868951-75869010
Length
105 bp
Sequences
Splice sites
3' ss Seq
TACTGAAATGTGTTTTGTAGCTT
3' ss Score
5.04
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
GAATCCTATCCATCTTCTTCACCGATATGGTTTGTGGATTCTGAAGACCCAAATCTGACATCAGTTCTGGAACGTCTAGAAGATACTAAGAACAACAATTTG
Seq A exon
CTTCGTCAGCAATTGAAGTGGTTGATATGTGAACTCTGCAGTTTATATAACCTTCCTAAGCACCTGGATGTTGAGATGCTAGATCAACCACTACCCACGGGTCAG
Seq C2 exon
AATGGGACAACAGAAGAAGTGACTTCAGAAGAAGAGGAAGAAGAAGAAGAGATGGCTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000140367-'12-10,'12-5,15-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.245 A=0.310 C2=1.000
Domain overlap (PFAM):
C1:
PF0577317=RWD=FE(28.4=100)
A:
PF0577317=RWD=PD(18.1=60.0)
C2:
PF0577317=RWD=FE(15.4=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATCCTATCCATCTTCTTCACCGA
R:
TTCAGCCATCTCTTCTTCTTCTTCC
Band lengths:
162-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development