DreEX0082835 @ danRer10
Exon Skipping
Gene
ENSDARG00000100766 | ube2q1
Description
ubiquitin-conjugating enzyme E2Q family member 1 [Source:ZFIN;Acc:ZDB-GENE-050522-329]
Coordinates
chr18:50609094-50615462:-
Coord C1 exon
chr18:50615358-50615462
Coord A exon
chr18:50609402-50609524
Coord C2 exon
chr18:50609094-50609150
Length
123 bp
Sequences
Splice sites
3' ss Seq
GTGTGTGTGTGTGTTTTCAGCTC
3' ss Score
10.39
5' ss Seq
AAGGTCAGC
5' ss Score
7.09
Exon sequences
Seq C1 exon
GAGTCGTACCCGTCCACGCCGCCCATATGGTTTGTGGATTCGGATGATCCGAGTCTGACTGGAGTGCTGGAGCGTCTGGAGGAGGTCAGGAGGGGAAGCACACTG
Seq A exon
CTCCTGCAGCAGCTGAAGAGGCTGATCTGTGACCTGTGTCGCCTCTATAATCTCCCTCAGCATCCAGATGTGGAGATGCTGGACCAGCCGCTGCCTTCAGGACATCATACACACGACAGAAAG
Seq C2 exon
CTGGGCACGACAGATGAGGTGACATCAGAGGAGGAAGAGGAGGAGGACATGGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100766-'8-10,'8-7,9-10
Average complexity
S
Mappability confidence:
88%=100=75%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.109 A=0.444 C2=1.000
Domain overlap (PFAM):
C1:
PF0577317=RWD=FE(32.1=100)
A:
PF0577317=RWD=PD(16.0=41.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTCGTACCCGTCCACGC
R:
CTCTCCCATGTCCTCCTCCTC
Band lengths:
162-285
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]