HsaEX6033772 @ hg19
Exon Skipping
Gene
ENSG00000160714 | UBE2Q1
Description
ubiquitin-conjugating enzyme E2Q family member 1 [Source:HGNC Symbol;Acc:15698]
Coordinates
chr1:154527211-154528440:-
Coord C1 exon
chr1:154528336-154528440
Coord A exon
chr1:154527904-154528008
Coord C2 exon
chr1:154527211-154527261
Length
105 bp
Sequences
Splice sites
3' ss Seq
CTGTGCTCCCCTACCTGTAGCTA
3' ss Score
8.78
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GAGTCATACCCTGCTGTGCCCCCCATCTGGTCGGTGGAGTCTGATGACCCTAACTTGGCTGCTGTCTTGGAGAGGCTGGTGGACATAAAGAAAGGGAATACTCTG
Seq A exon
CTATTGCAGCATCTGAAGAGGATCATCTCCGACCTGTGTAAACTCTATAACCTCCCTCAGCATCCAGATGTGGAGATGCTGGATCAACCCTTGCCAGCAGAGCAG
Seq C2 exon
TGCACACAGGAAGACGTGTCTTCAGAAGATGAAGATGAGGAGATGCCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160714-'3-5,'3-4,4-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=0.343 C2=1.000
Domain overlap (PFAM):
C1:
PF0577317=RWD=FE(27.6=100)
A:
PF0577317=RWD=PD(13.8=48.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTCATACCCTGCTGTGCC
R:
CTCAGGCATCTCCTCATCTTCA
Band lengths:
156-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)