BtaEX6014745 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007515 | UBE2Q1
Description
Bos taurus ubiquitin-conjugating enzyme E2Q family member 1 (UBE2Q1), mRNA. [Source:RefSeq mRNA;Acc:NM_001206320]
Coordinates
chr3:16082641-16083834:+
Coord C1 exon
chr3:16082641-16082745
Coord A exon
chr3:16083080-16083184
Coord C2 exon
chr3:16083784-16083834
Length
105 bp
Sequences
Splice sites
3' ss Seq
ACTGTGATCCCCTACCCCAGCTA
3' ss Score
5.27
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GAGTCATACCCTGCGGTGCCCCCCATCTGGTCAGTGGAGTCCGATGACCCTAACTTGGCTGCTGTCTTGGAGAGGCTGGTGGACATAAAGAAAGGGAATACTCTG
Seq A exon
CTATTGCAGCATCTGAAGAGGATCATCTCCGACCTGTGTAAACTCTATAACCTCCCTCAGCATCCAGATGTGGAGATGCTGGATCAGCCCTTGCCAGCCGAGCAG
Seq C2 exon
TGTACACAGGAAGACGTGTCTTCAGAAGATGAAGATGAAGAGATGCCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007515-'15-4,'15-1,18-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=0.343 C2=1.000
Domain overlap (PFAM):
C1:
PF0577317=RWD=FE(27.6=100)
A:
PF0577317=RWD=PD(13.8=48.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTCATACCCTGCGGTGC
R:
CTCAGGCATCTCTTCATCTTCA
Band lengths:
156-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]