MmuEX6072214 @ mm10
Exon Skipping
Gene
ENSMUSG00000042572 | Ube2q1
Description
ubiquitin-conjugating enzyme E2Q family member 1 [Source:MGI Symbol;Acc:MGI:1917343]
Coordinates
chr3:89776077-89777281:+
Coord C1 exon
chr3:89776077-89776181
Coord A exon
chr3:89776512-89776616
Coord C2 exon
chr3:89777231-89777281
Length
105 bp
Sequences
Splice sites
3' ss Seq
TTTAATGTCTCTCCCCCCAGCTC
3' ss Score
10.47
5' ss Seq
CAGGTATGC
5' ss Score
9.37
Exon sequences
Seq C1 exon
GAATCATACCCTGCTGTGCCCCCCATCTGGTCGGTGGAGTCCGATGACCCTAACTTGGCTGCTGTCTTGGAGAGGCTGGTGGACATAAAGAAAGGGAATACTTTG
Seq A exon
CTCTTGCAGCATCTGAAGAGGATCATCTCTGACCTGTGTAAACTCTACAACCTCCCTCAGCATCCTGATGTGGAAATGCTGGATCAGCCCTTGCCAGCAGAGCAG
Seq C2 exon
TGCACGCAGGAAGAAGTGTCTTCAGAAGATGAAGATGAAGAGATGCCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042572-'3-8,'3-4,4-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=0.489 C2=1.000
Domain overlap (PFAM):
C1:
PF0577317=RWD=FE(27.4=100)
A:
PF0577317=RWD=PD(14.5=51.4)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATCATACCCTGCTGTGCCC
R:
CTCAGGCATCTCTTCATCTTCA
Band lengths:
156-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types