RnoEX0095805 @ rn6
Exon Skipping
Gene
ENSRNOG00000020791 | Ube2q1
Description
ubiquitin conjugating enzyme E2 Q1 [Source:RGD Symbol;Acc:1305305]
Coordinates
chr2:189108595-189109792:+
Coord C1 exon
chr2:189108595-189108699
Coord A exon
chr2:189109027-189109131
Coord C2 exon
chr2:189109742-189109792
Length
105 bp
Sequences
Splice sites
3' ss Seq
TTGATGTCTCCCCACCCCAGCTC
3' ss Score
7.1
5' ss Seq
CAGGTACTC
5' ss Score
7.04
Exon sequences
Seq C1 exon
GAATCATACCCTGCTGTGCCCCCCATCTGGTCGGTGGAGTCTGATGATCCTAACTTGGCTGCTGTCTTGGAGAGGCTGGTGGACATAAAGAAAGGGAATACTTTG
Seq A exon
CTCTTGCAGCATCTGAAGAGGATCATCTCTGACCTGTGTAAACTCTACAACCTCCCTCAGCATCCTGATGTGGAAATGCTGGATCAGCCCTTGCCAGCAGAGCAG
Seq C2 exon
TGCACGCAGGAAGAAGTATCTTCAGAAGACGAAGACGAAGAGATGCCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020791-'4-5,'4-2,6-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=0.343 C2=1.000
Domain overlap (PFAM):
C1:
PF0577317=RWD=FE(27.4=100)
A:
PF0577317=RWD=PD(14.5=51.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATCATACCCTGCTGTGCCC
R:
CTCGGGCATCTCTTCGTCTTC
Band lengths:
156-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]