HsaEX6075908 @ hg38
Exon Skipping
Gene
ENSG00000140367 | UBE2Q2
Description
ubiquitin conjugating enzyme E2 Q2 [Source:HGNC Symbol;Acc:HGNC:19248]
Coordinates
chr15:75843285-75859982:+
Coord C1 exon
chr15:75843285-75843846
Coord A exon
chr15:75854386-75854487
Coord C2 exon
chr15:75859878-75859982
Length
102 bp
Sequences
Splice sites
3' ss Seq
TGTGTCTCTGTGTTAAACAGGAA
3' ss Score
10.13
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
Exon sequences
Seq C1 exon
TGAGGGGGACGGGGGCGGGGTGGGGGCAGCCCTTTCCCAGGCGGTAGCGGGGGCGGCGTCGCTGTTGCCCTTTTAAGCCGCGGGGCCGCCGCCTCCTGCCGCTGGAGTCGGTTACAAAGGAAGCGCCACCCAGGCCGCCACACGCCGAGGCTTCCGCGCCCCTCGCCATTTTCCAGCAGCGCTCGACGAGGCGGAGCCGCGAGAGCGCGGCCCAGGCCGGCCCCGCGGGGCGGTCGCGGCCGTGACGGCGGCTCCGGGCCCGGCTCCCCTTCCGCGCCCGGCTCCCCTTCCGCGCCCCTCCCGCCGGAGATGAGGGGAAGATGTCCGTGTCAGGGCTCAAGGCCGAGCTGAAGTTCCTGGCGTCCATCTTCGACAAGAACCACGAGCGATTCCGCATCGTCAGTTGGAAGCTGGACGAGCTGCACTGCCAGTTCCTGGTGCCGCAGCAGGGCAGCCCGCACTCGCTGCCGCCGCCACTCACGCTCCACTGCAACATCACG
Seq A exon
GAATCCTATCCATCTTCTTCACCGATATGGTTTGTGGATTCTGAAGACCCAAATCTGACATCAGTTCTGGAACGTCTAGAAGATACTAAGAACAACAATTTG
Seq C2 exon
CTTCGTCAGCAATTGAAGTGGTTGATATGTGAACTCTGCAGTTTATATAACCTTCCTAAGCACCTGGATGTTGAGATGCTAGATCAACCACTACCCACGGGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000140367-'0-5,'0-4,12-5
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.045 A=0.245 C2=0.310
Domain overlap (PFAM):
C1:
PF0577317=RWD=PU(50.9=98.3)
A:
PF0577317=RWD=FE(28.4=100)
C2:
PF0577317=RWD=PD(18.1=60.0)
Main Skipping Isoform:
ENST00000267938fB7479
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAAGTTCCTGGCGTCCATC
R:
CCCGTGGGTAGTGGTTGATCT
Band lengths:
254-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains