DreEX0082842 @ danRer10
Exon Skipping
Gene
ENSDARG00000013990 | ube2q2
Description
ubiquitin-conjugating enzyme E2Q family member 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1919]
Coordinates
chr25:29007008-29020859:-
Coord C1 exon
chr25:29020541-29020859
Coord A exon
chr25:29019107-29019200
Coord C2 exon
chr25:29007008-29007225
Length
94 bp
Sequences
Splice sites
3' ss Seq
TACTCTTGATGTTTTTGTAGGAG
3' ss Score
6.04
5' ss Seq
AAGGCAATG
5' ss Score
1.24
Exon sequences
Seq C1 exon
CGCCTCTCTCTCCCCGCCCCCTCTTTGTTGTTTCTCTCCTCCAGCCTCCCTCCGCCGCCGCGCGCTCACACACACGCACTCTCGCTGGATCAGCTGCGCGCTCGCGGTCTCCGTGCGTCCCTTCCCCCCGCGGCCTGGCTGCTGATGAGATGAGTGGAAGATGTCGGTGTCGGGGCTGAAGGCCGAATTAAAGTTCCTGGAGTCAATCTTTGACCCAAACCATGAGCGATTTCGAATAATCGACTGGAAGCCAGACGAACTGAGCTGCCAGTTTAATGTGACGGGAGAAAAGCTGCTGATTATTCACTGCAACATCACG
Seq A exon
GAGTCTTATCCTTCAACACCACCAATATGGTTTGTTGATTCTGATGATCCAAGTCTGACTGAAGTCCTTGAGCGACTGGAGGATGTCAGAAAAG
Seq C2 exon
GATATTGAAGATCTAGACCACTATGAGATGAAAGAGGAACCAGTGGATGGGAAAAAGTCGGAGGACGATGGCATAGAGAAGGAGAACCTGGCCATTCTGGAGAAAATCCGCAAGAACCAGAGGCAGGACCACTTGAACGTAAGTGTCCATTCGGTAAGGTACCTTTTTATACAATTTGGGGTTGGGTGGTTCATTTTCGAATAAGAAAGCCAGGCCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000013990_MULTIEX1-1/3=C1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.229 C2=0.405
Domain overlap (PFAM):
C1:
PF0577317=RWD=PU(49.5=98.1)
A:
PF0577317=RWD=FE(32.4=100)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTGACGGGAGAAAAGCTGC
R:
GTTCAAGTGGTCCTGCCTCTG
Band lengths:
182-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]