MmuEX0050187 @ mm10
Exon Skipping
Gene
ENSMUSG00000032307 | Ube2q2
Description
ubiquitin-conjugating enzyme E2Q family member 2 [Source:MGI Symbol;Acc:MGI:2388672]
Coordinates
chr9:55148854-55168307:+
Coord C1 exon
chr9:55148854-55149826
Coord A exon
chr9:55162968-55163069
Coord C2 exon
chr9:55168203-55168307
Length
102 bp
Sequences
Splice sites
3' ss Seq
CCTAGTTGTCTTTGTAACAGGAA
3' ss Score
6.46
5' ss Seq
TCGGTAAGG
5' ss Score
10.48
Exon sequences
Seq C1 exon
GGGGGCGGCGTCGCTGTTGCCCTTTTAAGCCGCGGGGCCACCGCCTCCTGCGGGTGGAGTCGGTTACAAAGGCAGCAGCCGGCCCGGCTCCCGCACGCTCGCTCGCTCCCTCGCTCGCACGCCCGCCCGCCGAGGCCTCGCGCTCCTCGCCATTTTCCAGCCGCGCTCGGACGCGGGTCGCGGCGGCGGGGAGAGGCGGAGCCGCGAGAGCGCGGCCCGGGCCGGCCCCGCGGGGCGGTCGCGGCCGTGACGGCGGCTCCCGGCCCCGGCTCCCTTTCCTCACCCCTCCCGCTGGAGATGAGGGGAAGATGTCCGTGTCAGGGCTCAAGGCCGAGCTGAAGTTCCTGGCGTCCATCTTCGACAAGAACCACGAGCGATTCCGCATCGTCAGCTGGAAGCTGGACGAGCTGCACTGCCAGTTCCTGGTGCCGCCGCCGCCACCACCGCCGGGCAGCTCGCTTTCGCCGCCGCCGCCGCTCACACTTCACTGCAACATCACG
Seq A exon
GAATCTTACCCATCTTCTTCACCAATATGGTTTGTGGACTCTGATGACCCAAATCTGACATCAGTTCTGGAACGCTTAGAAGATACTAAGAACAACAGTTCG
Seq C2 exon
CTCCGTCAGCAATTGAAGTGGTTGATATGTGACCTCTGCAGATTATATAACCTTCCTAAGCACCTGGATGTTGAGATGCTAGATCAACCACTACCCACGGGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032307-'2-16,'2-8,7-16=AN
Average complexity
A_C3
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.298 A=0.289 C2=0.400
Domain overlap (PFAM):
C1:
PF0577317=RWD=PU(54.3=98.4)
A:
PF0577317=RWD=FE(28.4=100)
C2:
PF0577317=RWD=PD(14.7=48.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAAGTTCCTGGCGTCCATC
R:
GCATCTCAACATCCAGGTGCT
Band lengths:
244-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types