HsaEX6075908 @ hg19
Exon Skipping
Gene
ENSG00000140367 | UBE2Q2
Description
ubiquitin-conjugating enzyme E2Q family member 2 [Source:HGNC Symbol;Acc:19248]
Coordinates
chr15:76135622-76152323:+
Coord C1 exon
chr15:76135622-76136187
Coord A exon
chr15:76146727-76146828
Coord C2 exon
chr15:76152219-76152323
Length
102 bp
Sequences
Splice sites
3' ss Seq
TGTGTCTCTGTGTTAAACAGGAA
3' ss Score
10.13
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
Exon sequences
Seq C1 exon
TGAGGGGGACGGGGGCGGGGTGGGGGCAGCCCTTTCCCAGGCGGTAGCGGGGGCGGCGTCGCTGTTGCCCTTTTAAGCCGCGGGGCCGCCGCCTCCTGCCGCTGGAGTCGGTTACAAAGGAAGCGCCACCCAGGCCGCCACACGCCGAGGCTTCCGCGCCCCTCGCCATTTTCCAGCAGCGCTCGACGAGGCGGAGCCGCGAGAGCGCGGCCCAGGCCGGCCCCGCGGGGCGGTCGCGGCCGTGACGGCGGCTCCGGGCCCGGCTCCCCTTCCGCGCCCGGCTCCCCTTCCGCGCCCCTCCCGCCGGAGATGAGGGGAAGATGTCCGTGTCAGGGCTCAAGGCCGAGCTGAAGTTCCTGGCGTCCATCTTCGACAAGAACCACGAGCGATTCCGCATCGTCAGTTGGAAGCTGGACGAGCTGCACTGCCAGTTCCTGGTGCCGCAGCAGGGCAGCCCGCACTCGCTGCCGCCGCCACTCACGCTCCACTGCAACATCACG
Seq A exon
GAATCCTATCCATCTTCTTCACCGATATGGTTTGTGGATTCTGAAGACCCAAATCTGACATCAGTTCTGGAACGTCTAGAAGATACTAAGAACAACAATTTG
Seq C2 exon
CTTCGTCAGCAATTGAAGTGGTTGATATGTGAACTCTGCAGTTTATATAACCTTCCTAAGCACCTGGATGTTGAGATGCTAGATCAACCACTACCCACGGGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000140367-'0-3,'0-2,3-3=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.035 A=0.191 C2=0.286
Domain overlap (PFAM):
C1:
PF0577317=RWD=PU(50.9=98.3)
A:
PF0577317=RWD=FE(28.4=100)
C2:
PF0577317=RWD=PD(18.1=60.0)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAAGTTCCTGGCGTCCATC
R:
CCCGTGGGTAGTGGTTGATCT
Band lengths:
254-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)