DreEX0082839 @ danRer10
Exon Skipping
Gene
ENSDARG00000100766 | ube2q1
Description
ubiquitin-conjugating enzyme E2Q family member 1 [Source:ZFIN;Acc:ZDB-GENE-050522-329]
Coordinates
chr18:50609402-50617666:-
Coord C1 exon
chr18:50617261-50617666
Coord A exon
chr18:50615358-50615462
Coord C2 exon
chr18:50609402-50609524
Length
105 bp
Sequences
Splice sites
3' ss Seq
CTGTAATCTTGCTCTTTCAGGAG
3' ss Score
9.93
5' ss Seq
CTGGTAAAG
5' ss Score
5.75
Exon sequences
Seq C1 exon
CCGCACCGAACACACAGAACCCGGTTTCACCGAAACATCATGAAGGATTAACGGCAGATCAGCACTTTAAAACCGGCAGAGCAGAGATCAGGAGCCCCGAGCAGCGTCCAGCCCGCTGACGGCTTCATTCCCGCGCTGACACTCACGTAAACACGGCCGCAGCTGTTGTCCGCATCGCTTTTGTCCGCCGTTTGTCCGGTTCCTGCCCGGTTTCTGCCTCCCGGAGCCCGGAGATGACCGGAGGAAGATGTCGGTGTCGGGACTGAAGGCCGAGCTCAAGTTTCTGGAGTCCATTTTTGACCCACATCACGAGCGCTTCAGGATCATCGACTGGAAACCGGACGAGCTGAGCTGCCAGTTTAACGTTACCGGAGAACAGCTGCTCATCATACACTGCAATATCACG
Seq A exon
GAGTCGTACCCGTCCACGCCGCCCATATGGTTTGTGGATTCGGATGATCCGAGTCTGACTGGAGTGCTGGAGCGTCTGGAGGAGGTCAGGAGGGGAAGCACACTG
Seq C2 exon
CTCCTGCAGCAGCTGAAGAGGCTGATCTGTGACCTGTGTCGCCTCTATAATCTCCCTCAGCATCCAGATGTGGAGATGCTGGACCAGCCGCTGCCTTCAGGACATCATACACACGACAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100766_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.109 C2=0.444
Domain overlap (PFAM):
C1:
PF0577317=RWD=PU(49.1=98.1)
A:
PF0577317=RWD=FE(32.1=100)
C2:
PF0577317=RWD=PD(16.0=41.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGCCGAGCTCAAGTTTCTG
R:
TATGATGTCCTGAAGGCAGCG
Band lengths:
250-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]