MmuEX0050184 @ mm10
Exon Skipping
Gene
ENSMUSG00000042572 | Ube2q1
Description
ubiquitin-conjugating enzyme E2Q family member 1 [Source:MGI Symbol;Acc:MGI:1917343]
Coordinates
chr3:89773616-89776616:+
Coord C1 exon
chr3:89773616-89774038
Coord A exon
chr3:89776077-89776181
Coord C2 exon
chr3:89776512-89776616
Length
105 bp
Sequences
Splice sites
3' ss Seq
TCTTCCTGTTTCCCCCTCAGGAA
3' ss Score
12.21
5' ss Seq
TTGGTGAGG
5' ss Score
6.9
Exon sequences
Seq C1 exon
GGGGGATCAGGAAGTGCGGACCGCGGCGGCGGCGGAGCCCGGAGCGGAGGCCGGAGGCTCCCGGCCCGCCGGCCCCGGAGCGGAGCGGAGCGGAGGATGCAGCAGCCGCAGCCGCAGGGGCAGCAGCAGCCGGGGCCGGGGCAGCAACTGGGGGTCCAGGGGGCGGCGCCGGGGGCCGGGGGCGGCCCGGGAGGGGGCCCGGGGCCAGGGCCCTGCCTGAGGCGGGAGCTGAAGCTGCTCGAGTCCATCTTCCACCGCGGCCACGAGCGCTTCCGCATTGCCAGCGCCTGCCTGGACGAGCTGAGCTGCGAGTTCCTGCTGGCCGGAGCCGGAGGGGCCGGGGCCGGGGCTGCGCCCGGACCCCATCTCCCCTCCCGGGGATCGGTGCCGGGGGACCCCGTCCGCATCCACTGCAACATCACG
Seq A exon
GAATCATACCCTGCTGTGCCCCCCATCTGGTCGGTGGAGTCCGATGACCCTAACTTGGCTGCTGTCTTGGAGAGGCTGGTGGACATAAAGAAAGGGAATACTTTG
Seq C2 exon
CTCTTGCAGCATCTGAAGAGGATCATCTCTGACCTGTGTAAACTCTACAACCTCCCTCAGCATCCTGATGTGGAAATGCTGGATCAGCCCTTGCCAGCAGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042572-'0-4,'0-3,3-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.587 A=0.143 C2=0.489
Domain overlap (PFAM):
C1:
PF0577317=RWD=PU(55.6=63.3)
A:
PF0577317=RWD=FE(27.4=100)
C2:
PF0577317=RWD=PD(14.5=51.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTCGAGTCCATCTTCCAC
R:
ATCAGGATGCTGAGGGAGGTT
Band lengths:
258-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types