BtaEX6014746 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007515 | UBE2Q1
Description
Bos taurus ubiquitin-conjugating enzyme E2Q family member 1 (UBE2Q1), mRNA. [Source:RefSeq mRNA;Acc:NM_001206320]
Coordinates
chr3:16080089-16083184:+
Coord C1 exon
chr3:16080089-16080415
Coord A exon
chr3:16082641-16082745
Coord C2 exon
chr3:16083080-16083184
Length
105 bp
Sequences
Splice sites
3' ss Seq
CCCTGCTCTTTCCCCCTTAGGAG
3' ss Score
11.58
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
Exon sequences
Seq C1 exon
ATGCAGCAGCCGCAGCCGCAGGGGCAGCAGCAGCCGGGGCCGGGGCAGCAGCTGGGGGGCCAGGGGGCGGCGCCGGGGGCCGGGGGCGGCCCGGGGGGGGGCCCGGGGCCGGGGCCCTGCCTGAGGCGGGAGCTGAAGCTGCTCGAGTCCATCTTCCACCGCGGCCACGAGCGCTTCCGCATTGCCAGCGCCTGCCTGGACGAGCTGAGCTGCGAGTTCCTGCTGGCTGGGGCCGGAGGGGCCGGGGCGGGGGCCGCGCCCGGACCGCATCTCCCCCCACGGGGGTCGGTGCCTGGGGATCCCGTCCGCATCCACTGCAACATCACG
Seq A exon
GAGTCATACCCTGCGGTGCCCCCCATCTGGTCAGTGGAGTCCGATGACCCTAACTTGGCTGCTGTCTTGGAGAGGCTGGTGGACATAAAGAAAGGGAATACTCTG
Seq C2 exon
CTATTGCAGCATCTGAAGAGGATCATCTCCGACCTGTGTAAACTCTATAACCTCCCTCAGCATCCAGATGTGGAGATGCTGGATCAGCCCTTGCCAGCCGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007515-'4-1,'4-0,15-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.596 A=0.143 C2=0.343
Domain overlap (PFAM):
C1:
PF0577317=RWD=PU(56.1=63.3)
A:
PF0577317=RWD=FE(27.6=100)
C2:
PF0577317=RWD=PD(13.8=48.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTCGAGTCCATCTTCCAC
R:
ATCTGGATGCTGAGGGAGGTT
Band lengths:
258-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]