RnoEX0095801 @ rn6
Exon Skipping
Gene
ENSRNOG00000020791 | Ube2q1
Description
ubiquitin conjugating enzyme E2 Q1 [Source:RGD Symbol;Acc:1305305]
Coordinates
chr2:189106039-189109131:+
Coord C1 exon
chr2:189106039-189106454
Coord A exon
chr2:189108595-189108699
Coord C2 exon
chr2:189109027-189109131
Length
105 bp
Sequences
Splice sites
3' ss Seq
CTCCCTGCTTTCCCCCTCAGGAA
3' ss Score
12.15
5' ss Seq
TTGGTGAGG
5' ss Score
6.9
Exon sequences
Seq C1 exon
CAGGAAGTGCGGACCGCGGCGGCGGCGGAGCCCGGAGCGGAGGCCGGAGGCTCCCGGCCCGCCGGCCCCGGAGCGGAGCGGAGCGGAGGATGCAGCAGCCGCAGCCGCAGGGGCAGCAGCAGCCGGGGCCGGGGCAGCAACTGGGGGTCCAGGGGGCGGCGCCGGGGGCCGGGGGCGGCCCGGGAGGGGGCCCGGGGCCAGGGCCCTGCCTGAGGCGGGAGCTGAAGCTGCTCGAGTCCATCTTCCACCGCGGCCACGAGCGCTTCCGCATTGCCAGCGCCTGCCTGGACGAGCTGAGCTGCGAGTTCCTGCTGGCCGGAGCCGGAGGGGCCGGGGCCGGGGCTGCGCCCGGACCCCATCTCCCCTCCCGGGGGTCGGTGCCGGGGGACCCCGTCCGCATCCACTGCAACATCACG
Seq A exon
GAATCATACCCTGCTGTGCCCCCCATCTGGTCGGTGGAGTCTGATGATCCTAACTTGGCTGCTGTCTTGGAGAGGCTGGTGGACATAAAGAAAGGGAATACTTTG
Seq C2 exon
CTCTTGCAGCATCTGAAGAGGATCATCTCTGACCTGTGTAAACTCTACAACCTCCCTCAGCATCCTGATGTGGAAATGCTGGATCAGCCCTTGCCAGCAGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020791-'0-2,'0-1,4-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.569 A=0.143 C2=0.343
Domain overlap (PFAM):
C1:
PF0577317=RWD=PU(55.6=63.3)
A:
PF0577317=RWD=FE(27.4=100)
C2:
PF0577317=RWD=PD(14.5=51.4)
Main Skipping Isoform:
ENSRNOT00000028210fB15988
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTCGAGTCCATCTTCCAC
R:
ATCAGGATGCTGAGGGAGGTT
Band lengths:
258-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]