RnoEX0095812 @ rn6
Exon Skipping
Gene
ENSRNOG00000014529 | Ube2q2
Description
ubiquitin-conjugating enzyme E2Q family member 2 [Source:MGI Symbol;Acc:MGI:2388672]
Coordinates
chr8:59711549-59729064:+
Coord C1 exon
chr8:59711549-59711737
Coord A exon
chr8:59724257-59724358
Coord C2 exon
chr8:59728960-59729064
Length
102 bp
Sequences
Splice sites
3' ss Seq
CCTAGCTGTCTCTGTAACAGGAG
3' ss Score
7.2
5' ss Seq
TCGGTAAGG
5' ss Score
10.48
Exon sequences
Seq C1 exon
ATGTCCGTGTCAGGGCTCAAGGCCGAGCTGAAGTTCCTGGCGTCCATCTTCGACAAGAACCACGAGCTATTCCGCATCGTCAGCTGGAAGCTGGACGAGCTGCACTGCCAGTTCCTGGTGCCGCCGCCGCCACCGCCGGGCAGCTCGCATTCGCCGCCGCCGCCGCTCACACTCCACTGCAACATCACG
Seq A exon
GAGTCTTACCCTTCTTCTTCACCAATATGGTTTGTGGACTCTGATGACCCAAATCTGACATCAGTCCTGGAGCGCTTAGAAGATACTAAGAACAACAGTTCG
Seq C2 exon
CTCCGTCAGCAATTGAAGTGGTTGATATGTGACCTCTGCAGATTATATAACCTTCCTAAGCACCTGGATGTTGAGATGCTAGATCAACCACTACCCACGGGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014529-'3-7,'3-2,8-7
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.230 A=0.170 C2=0.314
Domain overlap (PFAM):
C1:
PF0577317=RWD=PU(53.9=98.4)
A:
PF0577317=RWD=FE(28.7=100)
C2:
PF0577317=RWD=PD(14.8=48.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAAGTTCCTGGCGTCCATC
R:
AGCATCTCAACATCCAGGTGC
Band lengths:
242-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]