BtaEX0039575 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004511 | VAV2
Description
vav 2 guanine nucleotide exchange factor [Source:HGNC Symbol;Acc:HGNC:12658]
Coordinates
chr11:104651635-104656023:-
Coord C1 exon
chr11:104655907-104656023
Coord A exon
chr11:104652923-104653010
Coord C2 exon
chr11:104651635-104651758
Length
88 bp
Sequences
Splice sites
3' ss Seq
GCGCCCGTGTGCTTGGCCAGGTT
3' ss Score
4.98
5' ss Seq
TTGGTACGT
5' ss Score
8.11
Exon sequences
Seq C1 exon
GTTTGCCGGAAATATGGAGAGGCAGCAGACCGACAACCTGCTCAAACCCCACGCCAGCGGGACCTACCTAATCAGGGAGCGGCCGGCGGAGGCCGAGCGCTTTGCCATAAGTATCAA
Seq A exon
GTTCAACGACGAGGTGAAGCACATTAAGGTGGTGGAGAAGGACAGCTGGGTCCACATCACAGAAGCCAAGAAATTTGAGAGCCTCTTG
Seq C2 exon
GAGCTGGTGGAGTACTACCAGTACCACTCGCTCAAGGAGAGCTTCAAGCAGCTGGACACCACACTCAAGTACCCGTACAAGGCCTGGGAACGCACAGCCTCCAGGGCCTCCAGCCGCTCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004511-'28-26,'28-25,29-26
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.100 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0001719=SH2=PU(52.0=97.5)
A:
PF0001719=SH2=FE(38.7=100)
C2:
PF0001719=SH2=PD(6.7=11.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGAAATATGGAGAGGCAGC
R:
CTTGAGTGTGGTGTCCAGCTG
Band lengths:
181-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development