RnoEX6016102 @ rn6
Exon Skipping
Gene
ENSRNOG00000007422 | Vav2
Description
vav guanine nucleotide exchange factor 2 [Source:RGD Symbol;Acc:1306285]
Coordinates
chr3:5817458-5820587:-
Coord C1 exon
chr3:5820471-5820587
Coord A exon
chr3:5818576-5818663
Coord C2 exon
chr3:5817458-5817581
Length
88 bp
Sequences
Splice sites
3' ss Seq
CTGTGTGTGTGTCCATCCAGGTT
3' ss Score
10.86
5' ss Seq
CTGGTGTGT
5' ss Score
4.96
Exon sequences
Seq C1 exon
GTTCGCTGGCAACATGGAACGGCAGCAGACGGACAATCTACTCAAGTCTCATGCCAGCGGGACCTACCTCATCAGAGAGCGCCCAGCAGAGGCAGAGCGTTTCGCCATCAGCATCAA
Seq A exon
GTTCAATGATGAAGTGAAACACATCAAGGTGGTGGAAAAAGACAGCTGGATCCACATCACGGAAGCTAAGAAGTTTGAGAGCCTCCTG
Seq C2 exon
GAGCTGGTGGAGTACTACCAGTGCCACTCACTTAAGGAGAGCTTCAAGCAGTTAGACACTACACTCAAGTTCCCCTACAAGTCTCGGGAGCGCGCCGCCACCAGGGCCTCAAGCCGATCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007422-'35-38,'35-37,38-38=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.075 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0001719=SH2=PU(52.0=97.5)
A:
PF0001719=SH2=FE(38.7=100)
C2:
PF0001719=SH2=PD(6.7=11.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTCAAGTCTCATGCCAGCG
R:
CCCGAGACTTGTAGGGGAACT
Band lengths:
167-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]