GgaEX6015359 @ galGal4
Exon Skipping
Gene
ENSGALG00000002699 | VAV2
Description
guanine nucleotide exchange factor VAV2 [Source:RefSeq peptide;Acc:NP_989473]
Coordinates
chr17:7053837-7054338:-
Coord C1 exon
chr17:7054222-7054338
Coord A exon
chr17:7054049-7054136
Coord C2 exon
chr17:7053837-7053960
Length
88 bp
Sequences
Splice sites
3' ss Seq
GCCTTTGCGTCCCGTCATAGGTT
3' ss Score
9.35
5' ss Seq
TTGGTACGT
5' ss Score
8.11
Exon sequences
Seq C1 exon
GTTTGCAGGGAACATGGAGCGGCAGCAGACGGACAACCTGCTGAAGGCCCACGTCAGCGGCACCTACCTGATCCGCGAGCGGCCGGCCGAGGCTGAGCGCTTTGCCATCAGCATCAA
Seq A exon
GTTCAACGAAGAAGTGAAGCACATCAAGGTGGTGGAGAAGGACAACTGGATCCACATCACGGAAGCCAAGAAGTTTGAAAGCTTGTTG
Seq C2 exon
GAGTTGGTGGAGTACTACCAGAACCATTCGCTGAAGGAGAGCTTCAAGCAGCTGGACACGACGCTCAAGTACCCGTACAAGTCACGGGAACGCTCTACCTCCAGGACCTTCACCCGCTCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002699-'47-45,'47-43,48-45=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.044 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0001719=SH2=PU(52.0=97.5)
A:
PF0001719=SH2=FE(38.7=100)
C2:
PF0001719=SH2=PD(6.7=11.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGACGGACAACCTGCTGAAG
R:
TTGTACGGGTACTTGAGCGTC
Band lengths:
172-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]