MmuEX6099878 @ mm10
Exon Skipping
Gene
ENSMUSG00000009621 | Vav2
Description
vav 2 oncogene [Source:MGI Symbol;Acc:MGI:102718]
Coordinates
chr2:27268899-27271891:-
Coord C1 exon
chr2:27271775-27271891
Coord A exon
chr2:27270128-27270215
Coord C2 exon
chr2:27268899-27269022
Length
88 bp
Sequences
Splice sites
3' ss Seq
CTGTCTGTCTGTCTATCCAGGTT
3' ss Score
11.43
5' ss Seq
CTGGTACGT
5' ss Score
9.57
Exon sequences
Seq C1 exon
GTTTGCTGGCAACATGGAACGGCAGCAGACGGACAATCTGCTCAAGTCTCATGCCAGTGGGACCTACCTCATCAGAGAGCGTCCAGCAGAGGCAGAACGCTTCGCCATCAGCATCAA
Seq A exon
GTTCAATGATGAGGTGAAACATATCAAGGTGGTGGAGAAAGATAGCTGGATCCACATCACGGAAGCTAAGAAGTTTGAGAGCCTCCTG
Seq C2 exon
GAGCTGGTGGAGTACTACCAGTGTCACTCACTCAAGGAAAGCTTCAAGCAGTTGGACACTACACTCAAGTTCCCCTACAAGTCTCGGGAGCGAACCACCAGCAGGGCCTCAAGCCGGTCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000009621-'60-49,'60-46,63-49
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.075 A=0.000 C2=0.063
Domain overlap (PFAM):
C1:
PF0001719=SH2=PU(52.0=97.5)
A:
PF0001719=SH2=FE(38.7=100)
C2:
PF0001719=SH2=PD(6.7=11.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCAAGTCTCATGCCAGTGG
R:
TCCCGAGACTTGTAGGGGAAC
Band lengths:
167-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types