BtaEX0039576 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004511 | VAV2
Description
vav 2 guanine nucleotide exchange factor [Source:HGNC Symbol;Acc:HGNC:12658]
Coordinates
chr11:104668144-104670852:-
Coord C1 exon
chr11:104670720-104670852
Coord A exon
chr11:104669108-104669122
Coord C2 exon
chr11:104668144-104668253
Length
15 bp
Sequences
Splice sites
3' ss Seq
CCTCTCCTCATGCTGCCTAGTCT
3' ss Score
4.62
5' ss Seq
ATGGTAAGC
5' ss Score
9.26
Exon sequences
Seq C1 exon
GTACCTGTTCCTGTTTGACAAGGTGGTCATCGTCTGCAAGAGGAGGGGCTACAGCTACGAGCTGAAGGAGATCATAGAGCTGCTCTTCCACAAGATGACCGACGACCCCATGAACAACAAGGACGTCAAGAAG
Seq A exon
TCTCACGGGAAGATG
Seq C2 exon
TGGTCCTACGGCTTCTATCTCATTCACCTACAAGGCAAGCAAGGCTTCCAGTTTTTCTGCAAGACAGAGGACATGAAGAGGAAGTGGATGGAGCAGTTTGAGATGGCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004511-MICROEX1
Average complexity
MIC_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(43.1=100)
A:
PF0016924=PH=FE(3.7=100)
C2:
PF0016924=PH=FE(35.3=100)
Main Inclusion Isoform:
ENSBTAT00000005932fB7680
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTCTTCCACAAGATGACCG
R:
GCAGAAAAACTGGAAGCCTTGC
Band lengths:
113-128
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development