GgaEX0003433 @ galGal4
Exon Skipping
Gene
ENSGALG00000002699 | VAV2
Description
guanine nucleotide exchange factor VAV2 [Source:RefSeq peptide;Acc:NP_989473]
Coordinates
chr17:7058182-7059368:-
Coord C1 exon
chr17:7059236-7059368
Coord A exon
chr17:7058710-7058724
Coord C2 exon
chr17:7058182-7058291
Length
15 bp
Sequences
Splice sites
3' ss Seq
TGCTCTCCCATGCTTTCCAGTCT
3' ss Score
7.29
5' ss Seq
ATGGTAAGC
5' ss Score
9.26
Exon sequences
Seq C1 exon
GTATTTATTTTTATTTGATAAAGTGGTGATCGTCTGCAAAAGGAAAGGATACAATTATGAGCTGAAAGAAATAATCGAGCTGCTCTTCCACAAGATGACCGATGACCCTATGAACAACAAGGACATTAAGAAG
Seq A exon
TCTCATGGAAAAATG
Seq C2 exon
TGGTCGTACGGCTTCTACCTGATCCACCTGCAGGGAAAGCAGGGCTTCCAGTTCTTCTGCAAGACAGAGGAGATGAAGAGGAAGTGGATGGAGCAGTTTGAAATGGCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002699-MICROEX2
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(43.1=100)
A:
PF0016924=PH=FE(3.7=100)
C2:
PF0016924=PH=FE(35.3=100)
Main Inclusion Isoform:
ENSGALT00000004255fB378
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACAAGATGACCGATGACCC
R:
CAGAAGAACTGGAAGCCCTGC
Band lengths:
105-120
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]