DreEX0084168 @ danRer10
Exon Skipping
Gene
ENSDARG00000044718 | vav2
Description
vav 2 guanine nucleotide exchange factor [Source:ZFIN;Acc:ZDB-GENE-091204-420]
Coordinates
chr21:18004406-18006745:-
Coord C1 exon
chr21:18006613-18006745
Coord A exon
chr21:18006176-18006190
Coord C2 exon
chr21:18004406-18004515
Length
15 bp
Sequences
Splice sites
3' ss Seq
TCTCTTTGCATGCCTGCCAGTCG
3' ss Score
6.52
5' ss Seq
ATGGTAAGC
5' ss Score
9.26
Exon sequences
Seq C1 exon
ATATATCTTCCTGTTTGATAAAGTTGTGATTGTTTGCAAGAGGAAAGGTTATAACTATGAGTTAAAAGAGGTTATCGAACTTCACCTCTACAAGATGTCTGATGACCCCATGAATAACCGTGACATGAAAAAG
Seq A exon
TCGAGTGGAAAAATG
Seq C2 exon
TGGTCGTACGGCTTTTACCTGATCCATCTGCAGGGGAAACAGGGATTCCAGTTCTTCTGCAAGACAGAAGACACCAAACGCAAATGGATGGAGCAGTTTGAGATGGCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044718-MICROEX2
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(41.1=100)
A:
PF0016924=PH=FE(3.7=100)
C2:
PF0016924=PH=FE(33.6=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCCATGAATAACCGTGACA
R:
TGCGTTTGGTGTCTTCTGTCT
Band lengths:
111-126
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]