BtaEX0039844 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006860 | VWA2
Description
von Willebrand factor A domain containing 2 [Source:HGNC Symbol;Acc:HGNC:24709]
Coordinates
chr26:35009779-35018489:+
Coord C1 exon
chr26:35009779-35009853
Coord A exon
chr26:35011317-35011450
Coord C2 exon
chr26:35018380-35018489
Length
134 bp
Sequences
Splice sites
3' ss Seq
GTTGCCCCACTCTGCCCTAGTGA
3' ss Score
5.41
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
TGCCTCCTTCCCTCCCTCTTCAGGAAGTCCACGTGAGCAAGGAGATTATTGGGAAGATTTCAGTCGCCAGCAAAA
Seq A exon
TGATGTGGTGCTCGGCCGCAGTGGACGTCCTGTTTCTGATGGATGGCTCTCATAGTGTCGGGAAAGGGAGCTTTGAAAGGTCCAAGCACTTCGCCATCACAGTCTGTGATGCTCTGGACATCAACCCTAGGAAG
Seq C2 exon
GTCAGGGTGGGAGCCGTCCAGTTCAGTTCCGTCCCTCGTCTGGAATTCCCCTTGGATGCGTTTTCAACCCAACAGGGAGTGAAGGGAAAAATCAAGAGGATGGTTTTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006860_MULTIEX1-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0009223=VWA=PU(20.9=80.0)
C2:
PF0009223=VWA=FE(20.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCTTCCCTCCCTCTTCAG
R:
AACCATCCTCTTGATTTTTCCCT
Band lengths:
178-312
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development