DreEX0084680 @ danRer10
Exon Skipping
Gene
ENSDARG00000075441 | vwa2
Description
von Willebrand factor A domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-100302-1]
Coordinates
chr12:30211318-30218288:-
Coord C1 exon
chr12:30218214-30218288
Coord A exon
chr12:30216089-30216222
Coord C2 exon
chr12:30211318-30211512
Length
134 bp
Sequences
Splice sites
3' ss Seq
TTTCTCTTGTGCTTGGTCAGTGA
3' ss Score
5.84
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
Exon sequences
Seq C1 exon
TTTGGTCCATTTTCTCTGTGCAAGAAATACAAACGGATCTTGACACCATTATGAAGATCAACGCTGCTGGAGAAA
Seq A exon
TGATGCAGTGCTCTGCAGCCATGGATATCCTCTTTGTGATGGATAGTTCATACAGTGTTGGAAAAGGAGGGTTTGAGAGATCCCGACACTACATGTTGAAGCTTTGTGAGGCTCTTGATGTCCGCCAAGACAAG
Seq C2 exon
AGGTGGAAGCACACAGACAGGTCTGGCTCTGAAGTTTGTTTTGAGGAAGGGGTTTTCCGGTGGACGTAATTCCTCTGTGCCGCGAGTCGTCGTCCTGTTATCTGACGGAAAGTCCCAGGGGGCCGTGCAGCTGCCTGCCTCTGAGCTCAAGCTGTCTGGAGTGCTTCTGTTTGCTGTGGGGATTCGCTACCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000075441_MULTIEX1-3/4=2-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0009223=VWA=PU(20.9=80.0)
C2:
PF0009223=VWA=FE(37.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTCCATTTTCTCTGTGCAAGA
R:
ATCCCCACAGCAAACAGAAGC
Band lengths:
256-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]