GgaEX6041063 @ galGal4
Exon Skipping
Gene
ENSGALG00000008980 | VWA2
Description
von Willebrand factor A domain containing 2 [Source:HGNC Symbol;Acc:HGNC:24709]
Coordinates
chr6:27271389-27273047:+
Coord C1 exon
chr6:27271389-27271463
Coord A exon
chr6:27272029-27272162
Coord C2 exon
chr6:27272938-27273047
Length
134 bp
Sequences
Splice sites
3' ss Seq
TGTGTCTTGTTCTCTCCTAGTGA
3' ss Score
9.53
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
TTTGGTTGGCATTGGGCATGCAGGAAATCCTCGCTGACCAGGAGACGATTGGCAAGATCTCAGCTGCTGGCCAAC
Seq A exon
TGATGTGGTGCTCAGCTTCTGTTGATATCCTTTTCCTCTTGGATGGCTCCTACAGCATTGGCAGAGGCAGCTTTGAAAGATCGAAGCACTTTGCAGGCAAGCTCTGTGATGCCCTGGACATCCATCCAGGCAGG
Seq C2 exon
GTCCGCGTAGGAATGGTGCAGTTTAGTTCAGCTCCCCACCTTGAGTTCTCACTGGATTCCTACCTAACCAAACAAGAAGTGAAAGAGAGGATCAAGAGGACAGCGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008980-'7-5,'7-4,10-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.081
Domain overlap (PFAM):
C1:
NO
A:
PF0009223=VWA=PU(20.9=80.0)
C2:
PF0009223=VWA=FE(20.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGGCATGCAGGAAATCCTC
R:
ACGCTGTCCTCTTGATCCTCT
Band lengths:
170-304
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]