RnoEX0098621 @ rn6
Exon Skipping
Gene
ENSRNOG00000025581 | Vwa2
Description
von Willebrand factor A domain containing 2 [Source:RGD Symbol;Acc:1562000]
Coordinates
chr1:277700734-277708176:+
Coord C1 exon
chr1:277700734-277700808
Coord A exon
chr1:277702668-277702801
Coord C2 exon
chr1:277708067-277708176
Length
134 bp
Sequences
Splice sites
3' ss Seq
CCATCTGCTCCTGTCTCCAGTGA
3' ss Score
8.78
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
TTTCCCTGTCCAGCTCTCTTCAGGAAGTGCATGTGAGCCGGGAGACCACGGGAAAGATCGCAGTGGCCAGCAAAT
Seq A exon
TGATATGGTGCTCAGCCGCGGTCGACATCCTGTTCCTGTTAGATGGCTCTCACAGCATTGGGAAAGGGAGCTTCGAGAGGTCCAAGCGCTTTGCCACTGCTCTCTGCGATGCCCTGGACATCAGTCCTGGCAGG
Seq C2 exon
GTCAGAGTGGGCGCCTTGCAGTTTGGTTCCACTCCTCATCTGGAATTCCCTTTGGATGCCTTTTCAACCCGACAGGAAGTGAAGGAGATCATCAAGAAGTTGGTTTTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025581-'2-3,'2-2,3-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0009223=VWA=PU(21.1=80.0)
C2:
PF0009223=VWA=FE(21.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCCTGTCCAGCTCTCTTCA
R:
ACCAACTTCTTGATGATCTCCTTCA
Band lengths:
178-312
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]