BtaEX0039896 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012265 | VWF
Description
Bos taurus von Willebrand factor (VWF), mRNA. [Source:RefSeq mRNA;Acc:NM_001205308]
Coordinates
chr5:104703751-104706615:+
Coord C1 exon
chr5:104703751-104703853
Coord A exon
chr5:104704210-104704284
Coord C2 exon
chr5:104706511-104706615
Length
75 bp
Sequences
Splice sites
3' ss Seq
TGTGGCCTCTTGTTCCCCAGTGC
3' ss Score
9.62
5' ss Seq
GTGGTACGT
5' ss Score
8.61
Exon sequences
Seq C1 exon
CTCCTGGAAACGTGGGTCCCAGACCATCAGCCCTGCCAGATCTGCACGTGCCTCAGCGGGCGGAAGGTCAACTGCACGACACAGCCCTGCCCCTCGGCCGGAG
Seq A exon
TGCCCACGTGCGGCCCATGTGAGGTGGCCCGGCTCCGGCAGAGCACGCAGCAGTGCTGTCCCGAGTACGAGTGTG
Seq C2 exon
TGTGTGACTTGGTGAGCTGTGACGTGCCCCCGGTGCCTAACTGCGAAGACGGCCTCCAGCCGGTGCTGGCCAATCCTGGCGAGTGCAGACCCAGCTTCACCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012265-'46-45,'46-44,47-45
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=FE(45.9=100)
A:
PF0009313=VWC=FE(33.8=100)
C2:
PF0009313=VWC=PD(1.4=2.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGATCTGCACGTGCCTCAG
R:
GTGAAGCTGGGTCTGCACTC
Band lengths:
167-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development