GgaEX1063596 @ galGal4
Exon Skipping
Gene
ENSGALG00000017272 | VWF
Description
von Willebrand factor [Source:HGNC Symbol;Acc:HGNC:12726]
Coordinates
chr1:74364695-74365599:-
Coord C1 exon
chr1:74365497-74365599
Coord A exon
chr1:74365314-74365388
Coord C2 exon
chr1:74364695-74364799
Length
75 bp
Sequences
Splice sites
3' ss Seq
ATGTTTCATTCTCACTCCAGCTG
3' ss Score
8.4
5' ss Seq
GTGGTAGGT
5' ss Score
7.23
Exon sequences
Seq C1 exon
CACATGGAAACATGGATTCCTTCCAATGAGCCTTGCAAGATCTGTACTTGTCTTGACAACAGAAAAGTAAACTGCACTGTTCGACCTTGCACTACTATCAAAA
Seq A exon
CTGTGCAATGTGGCCCCTGTGAAGTTCCTCGTCTGCGCAGGGACCCTAACCAGTGCTGCCCTGTGTATGAGTGTG
Seq C2 exon
TCTGTGATCTAGTTTCTTGTGATTTGCCTCCTGTCCCTGACTGTGAGTTTGGCCTGCAGCTTGCTCTGACCAATCCTGGAGAATGCAGACCAAACTATACATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017272-'68-88,'68-87,70-88
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=FE(45.9=100)
A:
PF0009313=VWC=FE(33.8=100)
C2:
PF0009313=VWC=PD(1.4=2.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTTCCAATGAGCCTTGCAA
R:
TCTCCAGGATTGGTCAGAGCA
Band lengths:
168-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]