MmuEX6007114 @ mm9
Exon Skipping
Gene
ENSMUSG00000001930 | Vwf
Description
Von Willebrand factor homolog [Source:MGI Symbol;Acc:MGI:98941]
Coordinates
chr6:125612983-125615216:+
Coord C1 exon
chr6:125612983-125613085
Coord A exon
chr6:125613522-125613596
Coord C2 exon
chr6:125615112-125615216
Length
75 bp
Sequences
Splice sites
3' ss Seq
TGGCTATTCTTCTCTTCTAGCTC
3' ss Score
9.21
5' ss Seq
GTGGTATGT
5' ss Score
7.64
Exon sequences
Seq C1 exon
TTCCTGGAGACCTGGGTCCCAGACCATCAGCCCTGTCAGATCTGTATGTGCCTCAGTGGGAGAAAGATTAACTGCACTGCCCAGCCGTGTCCCACAGCCCGAG
Seq A exon
CTCCCACGTGTGGCCCATGTGAAGTGGCTCGCCTCAAGCAGAGCACAAACCTGTGCTGCCCAGAGTATGAGTGTG
Seq C2 exon
TGTGTGACCTGTTCAACTGCAACTTGCCTCCAGTGCCTCCGTGTGAAGGAGGGCTCCAGCCAACCCTGACCAACCCTGGAGAATGCAGACCCACCTTTACCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001930-'54-53,'54-52,55-53=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=FE(47.9=100)
A:
PF0009313=VWC=FE(35.2=100)
C2:
PF0009313=VWC=PD(1.4=2.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCATCAGCCCTGTCAGATCT
R:
GCATTCTCCAGGGTTGGTCAG
Band lengths:
167-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: