RnoEX0098743 @ rn6
Exon Skipping
Gene
ENSRNOG00000019689 | Vwf
Description
von Willebrand factor [Source:RGD Symbol;Acc:621759]
Coordinates
chr4:158195985-158198208:+
Coord C1 exon
chr4:158195985-158196087
Coord A exon
chr4:158196533-158196607
Coord C2 exon
chr4:158198104-158198208
Length
75 bp
Sequences
Splice sites
3' ss Seq
TGCCTCTTCTTCTCCTCCAGCTC
3' ss Score
10.68
5' ss Seq
GTGGTATGT
5' ss Score
7.64
Exon sequences
Seq C1 exon
TTCCTAGAGACCTGGGTCCCAGACCATCAGCCCTGTCAGATCTGTATGTGCCTCAGTGGGAGGAAGATTAACTGCACTGCACAGCCATGTCCCACAGCCCGGG
Seq A exon
CTCCCACCTGTGGCCCTTGTGAAGTGGCTCGTCTCAAGCAGAGTGCAGACCTGTGCTGCCCAGAGTATGAGTGTG
Seq C2 exon
TGTGTGACCTGGTCAACTGCAACTTGCCACCAGTGCCTCCGTGTGAAGGAGGACTCCAGCCAACCCTGACCAACCCTGGAGAATGCAGACCCACCTTTACCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019689-'51-45,'51-44,52-45
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=FE(47.9=100)
A:
PF0009313=VWC=FE(35.2=100)
C2:
PF0009313=VWC=PD(1.4=2.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCATCAGCCCTGTCAGATCT
R:
GCATTCTCCAGGGTTGGTCAG
Band lengths:
167-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]