BtaEX0040425 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017743 | XIRP2
Description
xin actin-binding repeat containing 2 [Source:HGNC Symbol;Acc:HGNC:14303]
Coordinates
chr2:29086632-29098969:-
Coord C1 exon
chr2:29098839-29098969
Coord A exon
chr2:29088857-29098175
Coord C2 exon
chr2:29086632-29086765
Length
9319 bp
Sequences
Splice sites
3' ss Seq
TGATTTTCTCTCCCTTAAAGATG
3' ss Score
9.1
5' ss Seq
GTGGTAAAT
5' ss Score
5.18
Exon sequences
Seq C1 exon
TCATAGATACACCTGAAGATGAAGAGATTCCAAAGGTTTCGACTAAGTTTTTAAAAGAACAATTTGAAAAGTCTGTCCAGGAAAAGGTCCTTTATTCTGACAAAGAATTGACCCCAGCCAAGCAGATTAAG
Seq A exon
ATGGAAAGTGAATCTGAAGAGACTTTAAAGCCATCATCAATTGTGGGTACCTCTTCTACTTCTTACACTTCAACCAGCCAGAGGAAGGAAACATCAACCACCAGATACAGTGACCACAGTGCCACTTCCTCAACTCTGGCACAAATTAATGCCACTCCTTCGGAAAAGACAGAAGAATTTCCTCCTCCCCCTCCCGACATGCTTCAACCTCCAGTAGATGTGACAGCATTTTCCCAGTCCCCTGAACTCCCCAACCCTCCTAGAAAACCACCAGTCCCTAAAGAATTATACTCCAAGCAAAGAAATTTGTATGAATTAAACCGTTTATATAAACACATCCATCCTGAGTTAAGGAAAAACTTAGAAAAAGATTATATCAGTGAGGTTTCTGAGATTGTTTCTCGTCAAATGAATGCGGGGAGCTCAGTTTCAGCAGATGTGCAACAAGCCCGGTATGTTTTTGAAAATACGAATGACAGTTCTCAAAAAGGTCTGAACTCGGAAAGAGAACACGTGGAGTGGGATGAAATTCTGAAGGGGGAGGTGCAGTCCATGAGATGGATCTTCGAGAATCAGCCATTAGATTCCATCAACAATGGCTCTCCAGATGAAGACAACATCTCCAAGGGCATTGCTGATCAAGAAATCATTGCTGGTGGTGATGTGAAATATACCACATGGATGTTTGAAACCCAACCCATCGATACTCTGGGGGATCATTCTTCTGGCACTGAGAAACATGCTGAGAAAATTCCTGAGCTAGCCAGAGGAGATGTCCACACAGCCCGGTGGATGTTTGAAACAAAGCCATTAGACTCGATGAATAAATTGCATCAAAGCCAAGAAGAATCAATAGCAACTGCCATAAAGGACATAACTGGGGGGGATGTCAAGACTGTGAGATACATGTTTGAAACTCAACATCTGGATCAACTTGGACAACTTCACTCAGTAGATGAGATGCACCTACTGCAACTCAGATCTGAGCTCAAAGAAATTAAGGGGAATGTTAAGAGAAGTATAAAATATTTTGAAACGCAACCATTATATGTTATTAGAGATGGCTCAGGTCAAATGCTAGAAATTAAAACTGTTCACAGAGAAGATGTTGAAAAGGGGGATGTGAGAACAGCACGTTGGATGTTTGAAACACAGCCCCTAGACACAATTAACAAAGATATAACAGAAATTAAAGTCGTCAGAGGAATATCCATGGAAGAAAATGTCAAAGGTGGGGTGCATAGGGCCAAGTGGTTGTTTGAAACTCAACCTTTGGAGAAAATCAAAGAAGAGACAGAAGAGGTCATCGTTGAAAAGGAAACAGTAATAGGTACAGATGTCTCTAAAAAGTGTTGGATGTTTGAAACACAGCCATTAGATATTCTGAAAGAAGTTCCTGATGCAGACCATCTAAAGTCTGAAGAGATAATAGGGGGCGATGTACAAACTACTAAGCAACTATTTGAAACACTTCCAATAGAGGCTTTAAAAGATAGCCCTGATGTAGGAAAACTTCAAAAAATTACTGCTTCTGAAGAAGAAAAGGGGGATGTCAGGCACCAAAAATGGATTTTCGAAACCCAACCTCTGGAAGAGATTAGAGAAGATAAAAAAGAGTACATACGAACAGTGAAACTTGAAGAAGTTGACAGAGGAGATGTAAGGAATTATACACATATCTTTGAATCAAACAACTTGATTAAATTTGATGCATCACATAAAATAGAGGTGGAAGGAGTCACAAGAGGTGCTGTAGAGTTAAATAAATCACTCTTTGAAACAACACCATTATATGCCATTCAAGATCACCTTGGAAAATACCATCAAGTAAAGACAGTCCAGCAAGAAGAAATCCTAAGAGGTGATGTAAGAAGCTGTAGGTGGCTTTTTGAAACAAGGCCCATTGATCAGTTTGATGAAAGCATTCATAAATATCAGATAATTAGAGGAATATCTGCTCAAGAAATACAGACTGGGAATGTAAAATCTGCTAAGTGGCTATTTGAAACCCAACCACTTGATTCTATTAAACATTTTAGCAATATGGAAGAAGTAGAAAGGAAAACTGAACAAGTCACTGATATTGTTAAAGGGGATGTCAAAACCTGTAGATGGCTTTTTGAAACCCAGCCAATGGAATCTCTTTATGAAAAAGTTTCACTAATGACTGGCAGTAAAGAAATTCATAAGGGAGATGTCAAAGCCTGTACCTGGCTCTTTGAAACTCAGCCACTTGATACCATAAAAGATGACTCTGAAGCAACAGTCAAATTGCAAACTGTGAAACAAGAGGAAATCCATGGTGGGGATGTTCGTACAACATGTTTCCTTTTTGAGACAGAAAATTTGGACAGCATACAAGGAGAAGAAGGAAAGGAGATCAAAGCCATAGAAATGGATATCCAAGCTGGGGATGTCTCCAGCATGCGGCATAAATTTGAAAGTCAGTCCTTAGATTCTATAAGTTCCGGTTCAGAGGAGGTTTTGAGAAAGATCAAAACCCTAAAGGCTGAAGATATTCAGAAAGGCAATGTTTTAAATTGTAGGTGGCTCTTTGAAAACCAACCAATTGATATGATAAAAGAAAGTCAAGAAGGTGATGAATTAGTTAAGACAGTGACAGACATACAAGGTGGAAATGTAAGAAAGGGGTGCTTTATTTTTGAGACTTTTTCTTTAGATGAGATTAAAGAAGAATCGGACTATATTAGCACCAAGAAAACAATTACTGAAGAAGTAATAAAGGGCGACGTAAAAAGCTATAGAATGCTCTTTGAAACCCAGCCACTCTATGCAATTCAAGATCGAGAAGGGTTTTATCATGAAGTGACTACAGTTAAAAAGGAAGAGGTAATTCACGGTGATGTACGAGGGACAAGGTGGCTTTTTGAAACAAAACCATTAGACTCAATTAATGAATCTGAGACTGTGTATGTGATTAAATCTGTCACACAAGAAGACATTCAGAAGGGGGATGTTAGTTCTGTTAGATACAGATTTGAAACCCAGCCACTGGATCAGATTGCAAAGGAATCACGTGATATTGTGCCCACTGTGGACTGTATTCAAGGTGGGGATGTAAGGAAAAGTAAACAATTCTTTGAGTCTGAAAATTTGGATAAGAATACTTATGTAAGAACAGTAAGTGTCAATGAAATACAGAAGGGCAATGTTAAAACATCCACCTGGCTGTTTGAGACCCATACTCTAGATGAACTGAGAGGAGAAGGGTCAGAATATGAAAATATCAAAACAGTCACCCAGGAAGATATGCAGAAAGGTGATGTGAAGCAGGCAGTATGGCTCTTTGAAAATCAAACTTTGGATTCTATTAAGGAAGCAGATGAAAGCATCACAAAAATCACCAAGGAAGAAATCCCTCCTGCTGATGTCAAGACAACTACATGGCTCTTTGAAACCACACCCCTTCACAGATTTACTGAAAATAGGGTAGAAAAGGTGGAAATTATTGGCAAGAGCATTAAAGAAACCTTAGGAGAACTGTACTCTCAAAAAGTTATCGAGGCTCCTGGAATCATCATTGAAGCTGATGAGGTTGGGGATGTTCGAATGGCAAAATACAAGCTAATGAATCAAGCATCACCTGAGATACAGAAAGAAGAAATTATCAAGGTTGACCTCAGAAATATAATGGTGAACCTTCTTTCCAAAAGAGACTGTAAGAAAAGAGAGATTTTGGTCAGTGAAGAAGAGAAGGGAAATGTTAATCTGACCAAAACTCAGTTATTAAACAGATCAACAGAATTTCATGCTGAAAAAGAAGAGATAGTGAGTGGTGATGTCCAACAAGCAATAAAAAACCTGTTCTCTGAGGAAAGATCTGTAAAGAAAGGTATTTTGATTCAGGAAGATGAAAGAGGCGATATTAACATGACTATCTATTGTCTTCTTCATGAAAATGCTGGTGATACAATTAAGCGTGAAGAAATAGTAGGGGGTGATGTAAAACGTACGATTCATAATTTGCTATCTTCCATATCAAACAATAAAATATCTGAAAGGGCTAAAATTGATGCCTCTGAGAGAGGAAATGTTCAGTTTTTTACAACATGCATAGAAACTGGAGCTTTGGATTATCTCAGACAACTCCAGACAGGCTCAAATGAAATACTAACAGGTAGGAAACAAGAAAAAGAGGAAGAAATCATTGGTGGTGATGTAGAAGGCACAAAACTGTTATTAAAGAAAAGGCAATCTCAGGTTGAACGTACTGTTAATGAAACTGACATCATCCCAGGAGATGTGCGTAATACAGTTAAGGTTTTTCTGACAGAGCCTCAGAATACATCTTGTAAGTTACCCAAAGAAGAAATTATTAAAGGTGATGTGAAGTCAACCCTAAACTCCCTCAGCCAGGCCGTAAGTCAGAAAACAGTGGCTAAAACAGAAGAAATTATAAAAGGTGACATGCTGACCACCCTCAAGTCACTTAAGGAATCAAGTCAAAAATGGAAAGATTCTAAACAGCCTGATGTCGTCCCTGGGGATATTGAGAAAGCTATTGAATGCCTTGAAAAGACTGCACGTACGAGGACGGAAATACTGAAAAAGGAGCTTATCCTAGATGACCTCGAGGCATCATTAAGGAATCTAAAAGAAACACAAACAGCTTTCAAAGAGGTAAATAAAAGTGCAGTGAAAGATGAAGTGCAGACTGTGATGGCAGGATCCAAAGAAGAGCAGAAAACAGGGACTCATCAGGTGGCTGTCCAGAGGGACAAAAAAAGCATTCTGCAGCCAAGACCAGGACCCTTTGAGCCAGCAGCCAGGTGGCAGGAGGGAGCAGACATTCTCAATCAAACTATAAACAAATCTTGTCATGGAGATTTAATGAAAGAAAGAACTGAGGTTAATCTTCCAAAAGCCCCCAAAGGCCCTGTAAAGATTGTCATAGATCGTGAACAAAACAATGATGCTCTTGAGAAAAACCTTAGAAAACTATCTAATTCACACCAAGTGGGTATCTGGACTGATAACATGACAGAGCAACATCTTAGGGATGAACATGTAAGCGGACAGTTGACTTCAACCCTGTCAGTTAGGGAACATCGAAAAACCAAGGAAGCAGAGACAGAGAGAGAACAGAAGAAGGAGGCTGTGTTTTTGCAATCTATTGACAAAACAATTGGAAAGCAACAGACTGAAACTGGCCAACTGAGGAATGACTACCAGAAGATTGAGGCTTTCCCTGTCAAGAGTCCTAAAAATACCAAAAACACTAAAACATCAACAGATACACAAAGCTCTAGGCCTGGTTTAACCCAGGGTCCAGTCAACAGGATGGTTGGAGAAACACGTGAGGTTTCAGAGGACTTTCAGAAGCAGACTCTGTTAAAACAAGAAAAGCAATATTCTAATAAAGATATAATGAAAAAGAATGTGACCCTTCAACCAGGGTGGCAGACTTTGCCTGTGAATCAAGACATGTCAAATGTAACAGAAGTGAAAGTCTCCCAAAAAAGCCACAATCAACTTAAGGCAATTGACAAAAAGCAGACTGATATTCATCTGAAGAGCCAGGACTTTCTAATGAAGACAAATACCTCCAAAGACTTAAAAATGGCAATGGAAATGTCCTTTAATCCAATCAAATTTAACCCTGAAAATAATGCAAAGGAAAATGAGTTCCCTCTTCCACCTCCATCTCCACCTCCTCCTCTACCTTCCAATGCATCATCTGAAATTGAATTTCCTCTTCCTCCTCCACCTCCTTTAATGATGTTGCCTGAAAAAAATGTGTTTCCTCCATCACTGTCCACTGAGAAGATACAGGCTGAATTTGAAAATTTTCCAGGCCTCCCTCTTCCTCCACCACCAGAAGATGAGAAATTTGAAAGAGAATGTCTATCCACGTTTCCACCACCGCCCCCTCCTCCTCCAGCTCCAGCTCTAAAACCAGCACATCTCCTTTCCTCTTCTGTTCAAGAAAAGCATAATGGAACATTCATACAATACTCCCAAGAAGAAGCCTCAAGCTCTCAGGCTAAAATCACAACAGGAAAATCTGGAGGACGTTTGCCACCTCCCACACTCCCCAAACCCAAGTTTCCCAAGCAGATAGAAGATATAAAGAATCATAGTTCCCCAAAAGTTGATTTGGAAAATTCTCTGCCAGATACAGAATGTAAAATGACTCCCTCAAAGGATCAGAAAAGAGTAATAACGGCAACTAGCAGTGAACACATAGAGACAATGCAGAATGTATCTAGCAAAAGTCTTGATAAAAGAAAACAACTATCTATGGACTCTACAAGGTCTTTCTCACAGGCAGTTCCAGAAAGTTCACCACCCAAGAAAAAACCTATAGCACCTCTCATAAAATCTCATTCATTTCCAGCAGGTTCAGGGCAGCAAAGTCCAAAACCTTATATGAGAAAATTTAAAACACCTTTAATGATTGCTGAAGAAAAATACAGACAACAAAGAGAAGAGCTTGAAAAACAGAGACAGGGGAGTTCGGGCTACAACATAGTTAGAACAGAGAGCCAAAATCAAAACATATCAGAGTTGAAAAAGGAAGTGCTGTTACAAAAAACAAAGGAGGAGGTCCCCCTAACTGGAATGGATTCAGAGGTGACTGCAGCCCAAACCAACCCAGTCTCTCAAAGTCTTTCTCAAGATCTAAGGGTCTGTACTGATAACCAGCTTTCCACAACACCGGCAGTGACATTCTCTGCCAAGAGGCTCCAACATGTTCCAGCAACCTTGGAAGGCAAAGATACGATGAAAAAGGAAGTTTTGCAGAGCTCAAAGGGTATGATCCAATCTAAATCAGCTTGTGAAATTAAACAGAGTCAGCAAGAATATAGGACCCAGCAAACACAACAGAAGCATCTGGAGCAGTTGCACTTGCCCAAAAGCCAGCCAGTTTCCCCCAGTTTCAAAGTTAAAACCATGAAGGTTCCAATTCTAGGTCATAAGTTAGATGAAACAAACCACAGCTATGAAAGTCATAAAAAGCAATCTGAAGTTGATATTCAAACCATTACCAAACAACAGTACCAGGAAACCGGGAGAACAGAAGCAAGGACTGAAGGTAGTAGCTGTAAGCACTCAGTGACTGAAAAACATTATCAATTACCTGCGAAGGAGAAAAGAGCAACAATACAATTGCCTACAGAAACCACAGGGAAAAGCCATGAAAGTAAGCTCAAAATAGTTCATGAGAAGCAAAGAGAATTTAGAGAATCTGAGAGTGGGAAATTTCTAGGAAGTGAAGAAACAATTCAGGGACCACCAATGATTGGTCCAAAGAAAGAAAGTCTAATAGCTGAAACAAAACAAGAACACTTGAATATATCAGCTCAGAAGGTAGTCGAACAAAAGGTTACTGAGGCACATCTTGATTCTCAGACTCAGAATTTTCAGCAAACACATACACAGTCTTTTGAAAGTCAAGTTGAACATAAAAAATTGCCCCAGCCAAATAATAATCTTCAGGAAGAAAAATATCTTGGCATCAAGGGCATACAACAGAAACAAGTCTTTTCTAATACTAAAGAGTCAAAGCAAGAGATTACACAGAACAAATCTTTATTCTCTTCTGCGAAAGAATCCCAGCAGGATGATGGAAAACGTGCTGTAAATGTATTGGAATTCTTGAGAAAACGTGAAGAACTACAACAGATTCTGTCTAGGGTAAAAGAGTTTGAAGCAGAGCCAGATAAAAATGGCCTTAAGACATTTCAGATGCTGTTAAAAATTATTCCAGTATGGCTATTAAGTGAAGAAAAAAGAGAATATGGAGTTCACATTGCTATGGAGAATAACATAGAAAAAATCAAAGAAGAAATAACACACATTAAGACTCAGGCAGAGGATATGCTTGTGTCCTGTGAAAATACAATTCAAACGGCCATGATATCGTCTAAAGCGGGAAAGCAGAGAAATAAAGCTACCAGTCTTAATGAAACATTATCTAAAGTGTCTAATGCTAATGTCAGTTATAATAAAAATACCCAGCAGAAAGAAAATACAATTGTGGAAAAAGCAGAGCACCACCAAGTAGCAACTCATCAAGAAACTACTGCTCATCATCAAGTGAAAACCCATCAGGAAATTAAACTAGATGATGCCAAGGTTCCTCCTCCATCTTTAAAAACACGCCCATCGTCACCAACTTTCATAACGATCGAGTCTACCGCCCGGCGAACACAAACCTCTCCCAAGGATGAGCTTTCCCAGTCCCCTAAAAAGGACAGTTTTGCTGAACTATCACCAAGGCCGTCACAACCAACTAGAATCCTCAAAGCAAATACCTCCCCTTCGCCACCCAAGAGTCGTTCTGAACAACTTGTGAAACTCAAAGACACCACTGCGAAGTTATCCAGAGGGATCATCCCATGTTCATCAATAACCCCGGTTCCCATTGTGGAGAAGAGGTCTGAGATCATCACATCTCCTGCAACACTTCGCCGTCAAATTAAGATAGAGGCTCGTGGTAGGGACTCTCCACCTACAATCACAATACCTATAACTGTAAATCATGCTGACAGTGGTTCTTTCAAAGAATCCATGGAAGCTCAAGAGGAAGTAAGGAAAGTAGAGAATAGGTCGACTTACGTTCACAAAGATGGAGTAAATTCTGCTACAGACATAGTGCCAGATACTGAGTGTTTTGACGCAGTGGAAATCATCCGCAAAGTCGAAGGACCTCGCCTGTCAGAGCACGCGCAGAGATACGAAGCAGCCAACAGGACTGTTGAAATGGCTGAAAATTTCATGAGTGACCATGAACATGAAATAAACAGGTGGTTCAGGGGATTTGAGGATGGCCTAAGTTTTGACACACAGTCAAATAGAAGAGCTTATATAAATGGAGAAGCAAATCGTAATATAAAGCAAGAAAGCCGTTCATTTAAGGAGGAATTTGGATTAACATCTTCAGAAAGCACTAGCTTTACGGGTTTTTCTCACAGTCGTCCTAGAGAGCTACAAGAAATGATGCCCGTTAAGCTGCCCAGCATACGCTCTGAAACAAGGTCTCTCAGTGAACATTTCTCAGGTGTGGATGCATTTGAGAGTCAGGTTGTTGGGTCGAAGACGACAGTCTCTTCGTCACATGGCTCAGAAGCTGGCAGATCTCGCTTTGACTTCAAGCACGCCCCACCCACCTATGAGGATGTCATCGCCGGCCACATTTTAGATGTTTCTGATTCACCTAAAGAACTCAGGAGGAATTTTCAACAGACTTGGCAGGAGAGTGAAAGAGTTATTAAAAACTCGGGATATGCAACCTCAGATGCTTCTGCAACTGAGATGGAAACCACCTTCCAAGAGGAATCTGCATTTATACGTG
Seq C2 exon
AAACTGCAACTCCAAGACAAGGAAATATGCATACTTTGTCAAAAGACGGTTTATCCAATGGAGTGCCTAGTAGCAGACAGGCAGAGTTTTCATAAATCCTGTTTCCGCTGCCACCATTGCAACAGTAAACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017743_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.773 A=0.497 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0041217=LIM=PU(61.4=87.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development