HsaEX6016446 @ hg19
Exon Skipping
Gene
ENSG00000163092 | XIRP2
Description
xin actin-binding repeat containing 2 [Source:HGNC Symbol;Acc:14303]
Coordinates
chr2:168098287-168110675:+
Coord C1 exon
chr2:168098287-168098420
Coord A exon
chr2:168099079-168108457
Coord C2 exon
chr2:168110542-168110675
Length
9379 bp
Sequences
Splice sites
3' ss Seq
TGATTTTCTCTCCCCTAAAGACT
3' ss Score
6.52
5' ss Seq
GTGGTAAAT
5' ss Score
5.18
Exon sequences
Seq C1 exon
TCATTGATACACCTGAGGATGAAGAGATTCCAAAGGTTTCGACTAAGTTGTTAAAAGAGCAGTTTGAAAAGTCTGCCCAGGAAAAGATCCTTTATTCTGACAAAGAGATGACAACCCCAGCCAAGCAGATTAAG
Seq A exon
ACTGAAAGTGAATATGAAGAGACTTTCAAGCCATCATCAGTTGTGAGTACCTCTTCCACTTCTTGCGTTTCAACCAGCCAGAGGAAGGAAACATCAACTACAAGATATAGTGATCACAGTGTCACTTCCTCAACTCTGGCACAAATTAATGCTACTTCTTCAGGAATGACAGAAGAATTTCCTCCTCCCCCACCTGACGTACTTCAAACTTCAGTAGATGTGACAGCATTTTCCCAGTCCCCTGAACTGCCCAGTCCTCCTAGAAGACTACCAGTCCCCAAAGATGTATATTCCAAGCAAAGAAATTTGTATGAATTAAACCGTTTATATAAACACATCCATCCTGAGTTAAGAAAAAACTTAGAAAAAGATTATATCAGTGAAGTTTCTGAGATTGTTTCTAGTCAAATGAACTCAGGGAGTTCAGTCTCAGCAGATGTGCAACAAGCCCGGTATGTTTTTGAAAACACAAATGACAGTTCTCAAAAAGATCTGAACTCAGAAAGAGAATACTTGGAATGGGATGAAATTCTGAAGGGAGAGGTGCAGTCCATTAGATGGATCTTTGAGAATCAACCATTGGATTCCATCAACAATGGCTCTCCTGATGAAGGTGATATTTCCAGGGGCATTGCTGATCAAGAAATCATTGCTGGTGGTGATGTGAAATATACCACATGGATGTTTGAAACCCAACCCATCGACACACTTGGGGCTTATTCTTCTGACACTGTAGAAAATGCAGAGAAAATTCCTGAGCTAGCCAGAGGAGATGTCTGCACAGCTCGGTGGATGTTTGAAACAAGGCCATTGGACTCAATGAATAAAATGCATCAAAGTCAAGAAGAATCAGCGGTAACTATCAGTAAGGACATAACTGGGGGGGATGTCAAGACTGTGAGATACATGTTTGAAACTCAACATCTAGATCAACTTGGACAGCTTCATTCAGTGGATGAGGTTCATTTACTGCAGCTTAGGTCTGAGCTCAAAGAAATTAAGGGAAATGTTAAAAGAAGTATAAAATGTTTCGAAACTCAACCATTATATGTTATTAGAGATGGTTCGGGCCAAATGCTGGAAATTAAAACTGTTCACAGAGAAGACGTTGAAAAGGGAGATGTAAGAACAGCACGGTGGATGTTTGAAACACAGCCGTTGGACACAATTAACAAAGATATCACAGAAATTAAAGTTGTCCGAGGAATATCCATGGAAGAAAATGTCAAAGGTGGGGTGAGTAAGGCAAAGTGGTTATTTGAAACCCAACCTTTGGAGAAAATCAAAGAGTCAGAAGAGGTCATCATTGAAAAGGAAAAAATAATAGGTACAGATGTCTCCAGAAAGTGTTGGATGTTTGAAACCCAGCCATTAGACATTCTAAAAGAAGTTCCTGATGCAGATTCTCTACAACGTGAGGAGATAATAGGTGGTGATGTACAAACTACTAAGCATCTATTTGAAACACTTCCAATTGAAGCATTAAAAGACAGTCCTGATATAGGAAAGCTTCAAAAAATCACTGCCTCTGAAGAAGAAAAAGGGGATGTTAGGCATCAAAAATGGATTTTTGAAACCCAACCTCTGGAAGACATTAGAAAAGATAAAAAGGAGTACACACGAACAGTGAAACTTGAAGAAGTTGACAGAGGAGATGTGAAGAATTACACACATATCTTTGAATCAAACAATTTAATTAAATTTGATGCATCACATAAAATAGAGGTGGAAGGAGTTACAAGAGGTGCTGTAGAGTTAAATAAATCTCTCTTCGAGACAACACCACTGTATGCCATTCAAGATCCCCTTGGAAAATATCATCAAGTAAAGACAGTCCAGCAAGAAGAAATCGTAAGAGGTGATGTAAGAAGCTGTAGGTGGCTTTTTGAAACAAGGCCCATTGACCAGTTTGATGAAAGCATTCATAAATTTCAAATAATTAGAGGAATATCTGCTCAAGAAATACAGACTGGAAATGTGAAATCTGCCAAATGGTTGTTTGAAACCCAACCTCTTGATTCAATTAAATATTTTAGTGATGTGGAAGAAACAGAAAGTAAAACTGAACAAACTAGAGATATTGTTAAAGGGGATGTCAAAACCTGTAAATGGCTTTTTGAGACCCAGCCAATGGAGTCTCTTTATGAAAAAGTTTCGTTAATGACCAGCAGTGAAGAAATTCATAAGGGAGATGTCAAAACTTGTACTTGGCTCTTTGAAACTCAGCCACTTGATACCATAAAAGATGACTCTGAAACAGCAGTCAAATTGCAAACTGTAAAACAGGAGGAGATCCAAGGTGGGGATGTTCGTACAGCATGTTTTCTTTTTGAGACAGAAAATTTGGACAGCATACAAGGAGAAGAAGTGAAGGAAATCAAGCCTGTTGAAATGGATATACAAGCTGGAGATGTTTCCAGCATGAGGTATAAATTTGAAAATCAGTCCTTAGATTCTATAAGTTCTAGTTCAGAGGAAGTTTTGAAAAAGATCAAAACCTTAAAAACTGAAGATATTCAGAAAGGCAATGTTTTAAATTGTAGGTGGCTTTTTGAAAACCAACCAATTGATAAGATAAAAGAAAGCCAAGAAGGTGATGAATGTGTTAAGACGGTGACAGACATACAAGGTGGGGATGTAAGAAAGGGGTGCTTTATTTTTGAGACTTTTTCTTTAGATGAGATTAAAGAAGAATCTGACTATATCAGCACCAAGAAAACAATTACTGAAGAAGTAATACAGGGTGATGTAAAAAGCTACAGAATGCTCTTTGAAACCCAGCCACTCTATGCAATTCAAGACCGAGAAGGGTCCTATCATGAAGTGACCACAGTTAAAAAAGAAGAGGTAATTCATGGAGATGTGCGAGGAACAAGGTGGCTTTTTGAAACAAAGCCATTAGACTCTATTAATAAATCAGAAACTGTGTATGTTATTAAATCTGTCACACAAGAAGACATTCAGAAGGGAGATGTTAGTTCTGTCAGATACAGATTTGAAACTCAGCCACTGGATCAGATTTCTGAAGAATCACATAATATTATGCCCAGTATTGACCATATACAAGGTGGCAATGTAAAGACAAGTAGACAATTCTTTGAGTCTGAAAATTTTGATAAGAATAACTATATACGAACAGTAAGTGTCAATGAAATACAAAAGGGCAATGTTAAAACATCTACTTGGCTATTTGAAACCCACACTATGGATGAACTGAGAGGAGAAGGGTTAGAATATGAAAATATCAAGACAGTCACTCAGGAAGATGTGCAGAAAGGTGATGTTAAGCAGGCTGTGTGGCTTTTTGAAAATCGAACTTTCGATTCTATTATGGAAGCACATAAAGGTATCACAAAAATGACCAAGGAAGAAATCCCTCCTTCTGATGTCAAAACAACCACATGGCTCTTTGAAACAACACCACTTCATGAATTTAATGAAACTAGAGTAGAAAAGATAGAAATTATTGGCAAGAGCATTAAAGAAACCTTAGAAGATCTCTACTCTCAAAAAGTTATCCAGGCTCCTGGAATCATCATTGAAGCTGATGAAATAGGGGATGTTCGAATGGCAAAATACAAGCTAATGAACCAAGCATCTCCTGAGATACAGAAAGAAGAAATTATCAGGGCTGATCTCAGAAATATAATGGTGAACCTACTTTCCAAAAGGGACTGTACTGAAAGAGAGATTTTGATTAGTGAAGAAGAGAAGGGAAATGTTAATTTGACTAAAACTCAATTATTAAACAGATCAACTGAATTTCATGCTGAAAAAGAAGAGATAGTGAAAGGTGATGTACAACAAGCAATAAAAAACCTGTTCTCTGAGGAAAGATCTGTAAAGAAAGGCATCTTAATTCAGGAAGATGAAAAAGGAGATATTAACATGACTATCTATTGTCTTCTTCATGAAAATGATGGTGACACAATTGAGCGTGAAGAAGTAATAGGTGGTGATGTCAAACGTACCATTCATAATTTATTGTCTTCCACATCAAACAATAAAATATCTGAAAGGGCTAAAATTGATGCCTCTGAGAGAGGAAATGTTCAGTTTTTCACAACCTGCATAGAAGCTGGAGCTTTGGATTATCTGAAACAACTCCACACAGAGTCAAATGAAACACTGACAGCTAAGAAACAAGAAGGAGAGAAAGAAATCATTGGTGGTGATGTTGAAGGTACAAAACTGTTACTGAAGAAAAGGCAGTCTCTGGTTGAACGTACTGTTAGTGAAACTGACATCATCCCTGGAGATGTGCATAACACAGTTAAGGTTTTTATGACCGAGCCTCAGAGTACATTTGGTAAGATACCCAAAGAAGAGATTATAAAAGGTGATTTGACATCAACCCTAAATTCCCTCAGCCAGGCTGTAAATCAGAAAACAGTGACGAAAACAGAAGAAATTATAAAAGGTAACATGCTAGCCACACTCAAGTCACTTAAAGAATCAAGCCATCGATGGAAAGAATCTAAACAGCCTGATGCCATCCCTGGTGATATTGAAAAAGCTATTGAATGCCTTGAAAAAGCTACAAATACAAAGACAGAAATTCTGAAAAAGGAGCTTCTCAAAGATGACCTGGAAACATCACTAAGGTCTTTGAAAGAAGCACAAAGAAGTTTCAAAGAGGTACATAAAGAAGGTGTAATAAAAAAAGATGCTAAAGCTGTGATGGCAGGATCCTCGGGAGAGCAGAAAACAGATATTCATCAGGTTGCTGTCCAGAGGAACAAAAATAGTCTTCTTCAGCCAAAGCCAGGTCCATTTGAGCCAGCGGCCAAGTGGCAAGGGGGAGCAGATACTCTCAGTCAAACTATGGGGAAATCTTGCCATGGCAATTTAGTAGAAGAAAGAACTGAGGTTAATCTTCCAAAAGCCCCCAAAGGCACTGTAAAGATTGTCATAGATCGTGAACAAAACAATGATGCTCTGGAGAAAAGCCTTAGAAGACTATCTAATTCACACCATAAATCTAATGTTTTGGAATCAGGAGACAAAACGGGTGTCTGGACTGATACTACAGGAGAACAGCATCTTAGAGATGAATATATGAGCAGACAATTAACTTCAACTGTGTCAGTTAAGAATAATCTAACAACTAAAGAATCAGACAGGGCAGTGAGAGAGCTGAAGAAGGATGATGTCTTTAATTCCATCCAATCTGCTGGTAAAACCGTTGGAAAGCAACAGACATATGAACTGAGAAATGACCACCAGAAAATGGAGGGTTTTCATATAAAGAGTCCTAAAAAGACCAAAAATATTAAAATATTAACTGATACACAAAGCTCCAAGCCCAGTCCCACCCAGCATCCAGTCAGCATGCCAGTTGGAGGAACTTACGACCTTTCAGGGGACTTTCAGAAGCAAACTTTGTTAAAGCAAGAAACAAAATATTCTAATAAGGATATAAAGAAAAAGAATATAAACCTTCAACCAATGTGGCAGCTTTTGCCTGTAGAGCAAGACACATCCAATGTAACAGAAATGAAAGTCTCTGAAAAAAGTCACAATACATTTAAGGCAACCAACAAAAAGCGGGAGACTGATGTTCACTTGAAAAGCCAGGACTTTCTAATGAAAACAAATACTTCCACAGGCTTAAAAATGGCAATGGAAAGGTCCTTGAATCCAATCAACTTTAACCCTGAGAATAATGTAAAAGAAAGTGAGTGCCCCCTTCCACCTCCATCTCCACCTCCTCCACCACCTTCTAATGCATCATCTGAAATTGAATTTCCTCTTCCTCCTCCACCTCCTTTGATGATGTTTCCTGAAAAAAATGGGTTTCTTCCCTCACTGTCCACAGAGAAGATAAAGGCTGAATTTGAAAGTTTTCCAGGCCTCCCTCTTCCTCCACCTCCAGTAGATGAGAAATCTGAAAGAGAAAGTTCATCGATGTTTCTGCCGCCTCCTCCTCCTCCAACTCCATCTCAAAAGCCAGCACATCTCCTTTCCTCCTCTGCTCCGGAAAAGCACAGTGGAGACTTCATGCAACAATATTCCCAAAAAGAAGCCTCGAACTCTCAGAATTCTCAGGCTAAAATCATAACAGGAAAAACCGGTGTGTTGCCACCTCCCACATTGCCCAAACCCAAACTTCCCAAGCATATAAAAGATAATAAGAACGATTTTTCCCCCAAAGTTGAACTGGCAACCTCCCTGTCAGATATGGAATGTAAAATTACTACCTCAAAGGATCAGAAAAAAGTAATGGTGATGACCAGCAGTGAACACACGGAGACAAAGCAGAACGTTATTAGTAAGAGTCTTGATGAAAGAAAACAATTATCTATTGACTCTGCAAACTGTCTCTCACACACAGTTCCAGGAACTTCAGCACCCAGGAAAAAACAGATTGCGCCTCTTATAAAATCTCATTCATTTCCAGAGAGTTCAGGACAACAAAATCCAAAACCTTATATGAGAAAATTTAAGACACCTTTAATGATTGCTGAAGAAAAATATAGACAACAAAAAGAAGAAATTGAAAAACAGAAACAGGAGAGTTCTTACTACAACATTGTTAAAACTCAAAGCCAAAATCAACACATAACAGAGGTGGAAAAGGAAATGCCATTACAAAAAACCAATGAGGAGGTTTCCCTATCTGGAATTGATTCAGAATGCACTGTGGTTCAACCCAGCCCAGGCTCTCAAAGTAATGCTCGGATACTAGGAGTGTGTTCTGATAACCAACTCTCCACAACATCGCCAGAAACAGTCGCTGCCAAGAGGCTCCACCATGTTTTAGCAGCTTCAGAAGACAAAGATAAGATGAAAAAGGAAGTTTTACAAAGCTCAAGGGACATTATGCAATCCAAATCAGCTTGCGAAATTAAACAAAGTCACCAAGAATGTAGTACCCAACAAACACAACAGAAGAAGTATTTGGAGCAGTTGCACTTGCCCCAAAGCAAACCAATTTCCCCAAATTTCAAAGTTAAAACCATCAAACTTCCAACTCTAGATCATACATTAAATGAAACAGACCACAGCTATGAAAGTCATAAACAGCAATCTGAGATTGATGTTCAAACCTTTACCAAAAAACAATATCTGAAAACCAAGAAAACTGAAGCAAGCACTGAATGTAGTCATAAGCAATCTCTGGCTGAAAGACATTATCAGTTACCTAAGAAGGAGAAAAGAGTGACAGTACAATTGCCTACAGAATCCATACAGAAGAACCAGGAAGATAAGCTCAAGATGGTTCCCAGGAAGCAAAGAGAATTTAGCGGATCTGACAGAGGGAAACTTCCAGGAAGTGAAGAAAAAAATCAGGGACCATCAATGATTGGTCGAAAAGAAGAGAGATTAATAACTGAAAGAAAACACGAACATCTGAAGAATAAATCAGCACCAAAGGTCGTCAAGCAAAAGGTTATCGATGCACATCTTGATTCACAGACTCAGAATTTTCAGCAAACACAAATACAGACCGCTGAAAGTAAAGCTGAACATAAAAAATTGCCCCAGCCATATAATAGTCTGCAGGAAGAAAAATGTCTCGAAGTCAAGGGCATACAAGAGAAACAAGTCTTCTCTAATACTAAAGATTCAAAGCAAGAGATTACACAGAACAAATCTTTCTTTTCCTCTGTGAAAGAATCCCAGCGGGATGATGGAAAAGGTGCCTTAAATATAGTGGAATTCTTGAGAAAACGTGAAGAACTGCAACAGATTTTGTCGAGAGTGAAACAGTTTGAAGCAGAGCCAAATAAAAGTGGCCTTAAAACATTTCAGACACTATTAAATACTATCCCAGGATGGCTGATAAGTGAAGATAAGAGAGAATATGCAGTTCACATTGCCATGGAGAATAATTTAGAAAAAGTAAAAGAAGAAATAACACATATTAAAACTCAAGCGGAAGATATGCTTGTGTCCTATGAAAATATAATTCAGACAGCCATGATGTCCTCCAAAACAGGAAAACCGGGAAATAAACCCACTAGTCTTGATGAAACATCATCCAAAGTATCTAATGTTCATGTCAGCAATAATAAAAATAGTGAACAGAAAGAAAATAAAATTGCCAAAGAGAAAACAGTACAGCACCAAGTAGCAGCTCATCATGAAGCAACTGTTCGTAGTCACGTGAAAACCCATCAGGAAATTAAACTTGATGATAGCAACATTCCTCCTCCCTCTTTAAAAACACGCCCACCGTCACCAACTTTTATCACAATAGAATCTACTGCCCGACGAACAGAAAACCCTACTAAGAACGAGCTTTCTCAGTCCCCTAAAAAGGACAGTTATGTTGAACCCCCACCAAGAAGGCCCATGTCGCAAAAATCTGAAATTCACAGAGCAAACACTTCCCCTTCTCCACCCAGGAGTCGCTCTGAACAACTTGTCAGACTCAAAGACACCACTGCAAAGTTATCCAAAGGGGCCATCCCATGTCCAGCAGCAACCCCGGTTCCAATTGTAGAGAAGAGGTCTGAAATCATCATGTCTCCTGCAACACTTCGTCGTCAAATTAAGATAGAAACTCGTGGTAGGGACTCTCCACCTACAATCACAATACCAGTAAATATAAATCATGCTGCTAGTGGTTCCTTCAGAGAATCTGTGGACGCTCAAGAGGAAATCAGGAAAGTGGAGAAGAGAGCTACTTATGTTCATAAAGATGGACTAAATTCCACTGATCACATGGTGCCCGACACTGAAAGTTATGATGCAGTTGAAATCATCCGCAAGGTTGCAGTGCCTCCTCGCCTGTCAGAGCACACACAGAGATATGAAGCGGCCAACCGAACTGTTCAAATGGCTGAAAATTTCGTGAATGACCCTGAAAATGAAATAAACAGATGGTTCAGGGAATTTGAGCATGGCCCAGTTTCTGAAGCAAAGTCAAATAGAAGAGTTTATGCAAAGGGAGAAACAAACCATAACATACAACAAGAAAGTCGTACATTTTGTAAGGAGGAATTTGGATTAACATCTTTAGGAAACACGAGTTTTACAGACTTTTCTTGCAAACATCCTAGAGAACTGCGAGAAAAGATTCCTGTTAAGCAGCCCAGGATCTGCTCTGAAACCAGGTCTCTAAGTGAACATTTCTCAGGCATGGATGCATTTGAGAGTCAAATTGTTGAGTCGAAGATGAAAACCTCTTCATCACATAGCTCAGAAGCTGGCAAATCTGGCTGTGACTTCAAGCATGCCCCACCAACCTATGAGGATGTCATTGCTGGACATATTTTAGATATCTCTGATTCACCTAAAGAAGTAAGAAAAAATTTTCAAAAGACGTGGCAAGAGAGTGGAAGAGTTTTTAAAGGCCTGGGATATGCAACCGCAGATGCTTCTGCAACTGAGATGAGAACCACCTTCCAAGAGGAATCTGCATTTATAAGTG
Seq C2 exon
AAGCTGCTGCTCCAAGACAAGGAAATATGTATACTTTGTCAAAAGACAGTTTATCCAATGGAGTGCCTAGTGGCAGACAAGCAGAATTTTCATAAGTCCTGCTTCCGATGCCACCATTGCAACAGTAAACTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000163092-'11-14,'11-13,12-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.543 A=0.505 C2=0.236
Domain overlap (PFAM):
C1:
PF0231811=FYVE_2=FE(38.3=100)
A:
PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5)
C2:
PF0231811=FYVE_2=FE(38.3=100),PF0041217=LIM=PU(61.4=77.8)
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)