RnoEX0099949 @ rn6
Exon Skipping
Gene
ENSRNOG00000034258 | Xirp2
Description
xin actin-binding repeat containing 2 [Source:RGD Symbol;Acc:1302980]
Coordinates
chr3:53632436-53645015:+
Coord C1 exon
chr3:53632436-53632569
Coord A exon
chr3:53633326-53642650
Coord C2 exon
chr3:53644882-53645015
Length
9325 bp
Sequences
Splice sites
3' ss Seq
TTTGATTTTCTCTCTTAAAGATT
3' ss Score
8.75
5' ss Seq
GTGGTAAAT
5' ss Score
5.18
Exon sequences
Seq C1 exon
TCATTGATACACCAGAAGACGAAGAGATTCCTAAGGTTTCCACTAAGATTTTAAAAGAGCAATTTGAAAAGACTGCCCAGGAAAACTTCCTCTACTCTGATAAAGAAACAACAACCCCAGCCAAGTGTATAAAG
Seq A exon
ATTGAAAATGACAGTGAAGAAACCTTAAAGCCATCATCGGCTATGGGTACCTCTTCTTATACTTCAGCCAGGCAAAGCAAGGAAACTTCAACCTCAAGTTATAGTAATCACAGTCTGACTTCAACAATCCTGGCACAAGAAAAGGGCACTCCTTCAGGAAAGATGGAAGAATTTCCTCCTCCCCCACCTGATGTTTTTCAAACACCAATGGATGTGACAGCATTTTCCCAGTCCCCTGAATTCCCCAGCCCTCCTAGAAGACTGCCAATGCCCAGAGATGTATATTCCAAGCAACGAAATTTGTATGAATTAAACCGTTTATATAGGCATATCCATCCTGAGTTAAGAAAAAACTTAGAAAAAGATTATATCAGTGAGGTTTCTGAAATTGTTTCTAGTCACATAAACTCAGGGAACTCGATATCAGCAGGTGTACAACAAGCTCGGTATGTTTTCGAAAATACGAATGACAGTTCTCAGAAAGATTTGAGCTCAGAAAGAGAAAACCTGGAGTGGGATGAAATTCTGAAAGGAGAGGTGCAGTCAATTCGATGGATTTTTGAGAATCAGCCATTAGATTCTATCAACCAAGGTTTTACAGATGAAGCGTACACTTCCAAAGGCATTGCTGACCAAGAACTCATTGCTGGGGGTGACGTGAAATATACGACTTGGATGTTTGAAACTCAGCCAATAGATGCATTGGGAGTTCCTTCTGCTGGCACTGAAGAAAACACTGAGAAAATTCCTGAGCTAGCTAAAGGAGATGTTTGCACAGCAAGGTGGATGTTTGAAACAAGGCCTTTAGACTCAATGAACAAAATGCATGAATGGGAAGATGAAACGGCATCTACTTTTATAAAGGACATAACTGGGGGAGATGTCAAGACTGTGAGATACATGTTTGAAACTCAACAACTGGATCAACTTGGACAGCTTCACTCAGTGGATGAAATGAACTTATTACAACTCAGATCAGAGCTCAAAGAAATTAAAGGAAATGTTAAGAGAAGCATAAAATGTTTCGAAACTCAACCACTGTATGTCATTAGAGATGGTTCAGGCCAAATGCTAGAAATTAAAACTGTGCAGAGAGAAGACATTGAAAAGGGAGATGTAAGGACAGCACGCTGGATGTTTGAAACGCAGCCTTTGGACACAATAAAACAAGACATCACGGAAATTAAAGTTGTTCGAGGAATATCCATGGAGGAAAATGTCAAAGGCGAGGTGGGTAGAGCAAGGTGGTTATTTGAAACTCAACCACTGGAGAAAATCAAAGAAGAGTCAGGTGAGGCTGTCCTGAAAACAGAAGCAGTTGTAGGGATAGATGTGTCTAAAAAGTGTTGGATGTTTGAAACGCAGCCATTAGACACTCTAAAACAATCTCCTGATACAGAGAGTGTATCACCTGAAGAGAGGATAGGAGGTGACGTAAAAACCACCAAACATCTGTTTGAAACACTCCCAATAGAGGCCTTAAAAGACAGCCCAGATGTTGGAAAGCTTCAAAAAATCACTGCCTCTGAGGAAGAAAAGGGCGATGTTAAGCACCAAAAATGGGTTTTTGAAACTCAACGTTTAGAAGATATTAGAGAAGATAAGAAGGAATATACCCAGACAGTGAAGCTAGAAGCAGTGGACAGAGGGCATGTGAAGAACTATACACATATCTTCGAATCCAATAATCTAATTAAGGTTGATGCATCACATCAAATTGAGGTGGAAGGAGTCACAAGAGGCACTGTGGAGTTGAATAAATCTCTCTTTGAGACAACCCCACTGTATGCCATTCAAGACCATCTTGGAAAATACCACCAAGTAAAGACAGTCCAGCAAGAAGAAATAGTAAGGGGTGATGTAAGAAGCTGTAGATGGCTTTTTGAAACAAGGCCCATTGACCAATTTGACGAAAGCCTTCATAAATTTCAGATAATTAGAGGAATATCTGCTCAAGAAATACAGGCAGGGAATGTGAAATCAGCTAGGTGGCTGTTTGAGACCCAACCTCTTGATTCAATTAAATATTTTAGCAACGTGGAAGAAACAGACAGCAAAACTGAACAGAGTACTGATATTGTTAAGGGGGATGTCAAAACCTGTAAATGGCTATTTGAAACCCAGCCAATGGAGTCTCTTTATGAAAAAGCTTCCTTGATGACGAACTCAGAAGATATTCACAAAGGTGATGTTAGAACTTGTATGTGGCTATTTGAAACTCAGCCACTTGATGCCATAAGAAATGACTCTGAAGCCACAGTAAAACTGCAAACTGTGAAACAGGAGGAGATACAAGGTGGGGATGTCCGGACAGCATGTCTTCTTTTTGAGACAGAAAATCTGGACAACATACAGGGCGGTGAAGGGAAAGAAACGAAGCCCGTGGAGATGGATATAGAATCTGGGGATGTCTCTGGCATGAAGTATAAGTTTGAAAATCAGTCCTTAGACTCTATAAGTTGCAGTTCGGAGAATGTTTTGAATAAGATCAAAACCCTAAAAATCGAAGACATTCAGAAAGGCAATGTTTTAAATTGTAGGTGGCTATTTGAAAATCAACCTATCGATATGATAAAAGAAAATCAAGAAGGTGATGGATTGGTTAAGACAGTGACAGACATACAGGGTGGAGATGTGAGAAAGGGATGCTTCATTTTTGAGACGTTTTCTTTAGATGAGATTAAAGATGAATCTGATGTCATCAGCACCAGACAAACAAATACCGAGGAAGTAATAAAAGGTGATGTAAAAAGCTACAAGATGCTTTTTGAAACACAACCACTCTATGCGATTCAAGACCAAGAAGGGTTTTATCATGAAGTGACAACAGTTAAAAAAGAAGAAACTATTCATGGAGATGTACGAGGAACAAGGTGGCTCTTTGAAACAAAACCGTTAGACTCAATTAACGCATCAGAAGATGTATACATTATTAAATCTGTCACTCAGGAAGACATTCAGAAGGGGGATGTGAGTTCTGTCAGATACCGATTTGAAACACAACCACTGGATATGATTTCAGACAAATCACATAATATTATGCCCACTATTGACCATATTCAAGGAGGCAATGTGCAGATGAATAAACAACTATTCGAGTCTGAAGGTGGTGACAAGAAGAATTATGTAAGAACAGTGAGCATCAATGAAATACAAAAGGGCAATGTTAAGACTTCTACTTGGCTCTTTGAAACTCACAGCATAGATGAGCTGGGAGAAGTGTCCACCTATGAAAATATCAAGACAGTCACCCAGGAAGACGTGCAGAAAGGTGACGTGAAGCAAGCAGTGTGGCTTTTTGAAAATCAGACATTGGATTCCATTAAGGAACTTGATGAAAGTGACACCAAAATAACCAAAGAAGAAATTCCTCCGTCAGATGTCAAGACAACAACGTGGCTCTTTGAAACGACACCTATTCACGAATTTAATGAAACTAGAATAGAAAAGGAAGAAATTATTGGTAAAAGCATTAAAGAAACCTTGGAAGACCTCTACTCTCAAAGAGTGGTTGAAGCTCCCGGAATCATCATTGAAGCTGATGAAGTTGGGGATGTCAGAATGGCCAAATACAAGCTCATGAACCAAAGGACTCCTGAGATCCAGAAGGAAGAAGTTATCAGAGCTGACCTTGGAAACATAATGATGAACTTGCTTTCCCAAAGAGACTGCACAAAAAAGGAGATATTTATCAGTGAAGAGGAGAAGGGAAATGTCAATTTTACTAAAACCCAGTTATTAAACAGATCAATGGAATTCCATGCTGAAAAGGAAGAGATAGTAAGAGGGGATGTAAAACAAGCAATCCAAAAGCTGTTCTCTGAGGAAAGGTGTGCAAAGAGAGGCATATTAATTCAAGAAGATGAAAAGGGAGATGTTAACATGACTATCTATTGTCTTCTTCATGAGAATGCTGGCGACAAGACTAAGCGTGAAGACATACTGGGAGGTGATGTGAGGCGCACTATTCATAACCTGTTGTCTTCCGCATCAAATGATAAAATATCTGAAAGGACAAAAATCGATGCATCGGAGAGGGGAAATGTTCAGTTCTTCACAACATGCATAGAAACTGGAGCTTTGGATTACCTCAAGCAACTCCAAACAGGGTCAAATGAAACACTCACAGCTAGAAAGCAAGAAGGGGAGGAAGAAATAATTGGTGGTGATGTTGAGGGAACAAAATTCTTACTAAAGAAAAGACAGTCTTCTATTGAACGCACTGTTAGTGAAACTGATATCATCCCAGGAGATGTGCGTAATACAGTTAAAGTCTTCATGACGGAGCCCCAGAGTGCATCTTTTAAGACAGCGAAAGAAGAGATTGTAAAAGGTGATTTGAAATCAACCCTGAATTCTCTCAACCAGGCCATGAATCAGAAAGTAGTGGCTAAAACAGAAGATATTATGAAAGATGACAAGGCAGCTATACTCAAGTCACTTAAGGAGTCAGGTGGCAGACAGAAAGAACATAAACAATCTGCTAGCATCTCTAGTGATATTGGGCAAGCTATTGAGTGCCTTGAAAAGGCCACAAATACAAGGACAGAAATATTGAAAAAGGAGCTGATATTAGATGATCTTAAAACATCATTAAGGTCTTTGAAAGAAGAACAATACAGTTTCAAAGAGGTTGGTAAACAGGGAATGGTCAAAGATGTACTAGGATTCTCAGAGAGACAAGAACTAGGGATTCATCCAGCAGCTGTCCAGAGAGAGAAAAAAAGCCTTCTTCAACCAGTGCCAGGACCATGTGAGCCAGCAATCAGGCAGCAAGCAGGACCAGGCCCTCTTGATGAAGCTACACAGAAATCCTGCCATCGGTCTTTAACAGAAGAAAGAACTGAGGCTAATCTTCCCAAAGCCCCTAAGGGCACTGTAAAGATTGTCATTGATCGAGAACAAAACAACGATGCTCTTGAGAAAAGCCTTAGGAAAATGTCTAATTCAGAACATAGAGCTATGAAAAATGTTTTAGACATGGGTGACAGAAGGGGTGTCTGGACAGAGAGCAAAGAGTGTCTGTGTAGTGACGACCATATGAGCAAATACGTAAGTGCAAGCATGTCAAGGAAGAAAAGTCTAAAGACCAAGGAATCAGAGAATGTGAGAGAATCGAAGGACGATGTGAGCTCCACCCAGTCTGTGGATAAAACATTTAGGAAGCAACAGACTCAAAACTGTGAACTGGGGAAGGATCACCAGAAGTCTCAGTTCCAGGATTCCTATGCGAAGAATCAGAAAAATACCCAAAACATTAGTATGTCAGCAGAAACCCAAAGTTACAGACCAGACCCTACCCAACATCCAGTCAGCAATCCAGCTGGAGAAACGCTTGAGATGACAAGGGACTTTCAGAAGCAAGCCTTGATAAGACAGGAAAAGCAGAATTCTAATAAAGATATGAGGAAAAATGACATGGGCCTTCAACCTCTGCCTGTAGGGAAGGACGCACACAGTGCACCAGGAGTGACAGTCTCTGGGAAAAACCACAAAAGAACTCAGGCACCTGACAAGAAACAGAGAATTGATGTTTGTCTAGAAAGCCAGGACTTTCTAATGAAGACAAATACTTCCAAGGAGTTAAAAATGGCAATGGAGAGGTCCTTTAATCCAGTCAACCTTTACCCTGACTGTGGTGTAAAAGAAAATGAGGACGCCCTTCCTCCTCCATCTCCCCCTCCTCCTCCTCCTTCCAATGCGTCATCTGAAATTGAATTTCCTCTCCCTCCTCCACCACCTATAATGCTGTTGCCTGAAAAAAATGAGTTTCCTCCCTCATCACCCACAGAGAAGTCAAGGGCTGAACTTGAGAGCCTCCCAACCCTGCCTCTTCCTCCACCACCAGGAGATGAGAAATCTGATCAGGAATGTCTACCAACATCCCTACCTCCTCCCCCTCCCACAGCTCCATCCCAACCAGCACATCTTCTTTCCTCCTCTGTTTTAGAACATCACAGTGAAGCATTTTTACAACAGTATTCCCGAAAAGAAACCTTGGACTCTCATCAGCTTCACTCACAGGCTAAAATCCTAACAGGAAAATCACCACCCCCAACACTCCCCAAACCCAAACTTCCCGAGAGAATCAAAGCTAAGATGAGCCAGGATTCACCAAGCGGTGAATTGGAAAGATCTCTGTCAGATGTGGAAATTAAAACTACCCTCTCAAAGGATCAGAAAAGTTCGCTGGTGGCAGAAAGCCGTGAGCACACAGAGGCCAAGCAAGAAGTATTCCGAAAAAGCCTTGGAAGAAAACAGCTGTCAATTAGCTCTGCAAACTCCCTCTCTCAGACAGTTCCAGAAATCCCAGCACCCAAGGAAAAACAGACAGCACCCCTTGTTAAATCTCACTCATTCCCATCAGGTTCAGAACAACAAAGTCCTAAGCCTTACATGAGAAAATTTAAGACACCCTTAATGATTGCGGAAGAAAAATACAGACAGCAAAGGGAAGAGCTTGAGAAACAGAGACGGGAGAGTTCTTGCCATAGCATCATCAAAACAGAAACCCAGCACCGCAGCTTATCAGAGAAAGAGAAAGAAACAGAGTTACAAAAAGCAGCTGAGGCAATGTCCACTCCCAGAAAGGATTCAGACTTCACTAGGGCACAGCCCAACCTGGAACCTAAAAGCAAGGCTGTGATCGCCAGTGAATGCTCTGAAAGCCAGCTCTCTACAGCTTCCACATTGACAGTCGCTACCGAGAGGCTCCAGCATGTTCTAGCCGCTTCAGACGATAAGCTTACCCTGCGACGGGAAGGCACACAGAACTCAAGTGACACCCTACAATCGAAAACAGCTTGTGAGATTAACCAGAGTCACAAGGAATGTAGGACAGAGCAAACATTTGAGCAACACGTGGAGAAGTTGCCCTTCCCCCAAACCAAACCCATTTCCCCGAGTTTCAAAGTGAAAACTATCAGGCTTCCAGCTCTAGATCATACGCTGACTGAAACAGATCTCAGTTCTGAACGCCGCGTAAAGCAATCCGAAATTGACGTTCAAACCAGTACTAAAGAAATGAATAAGGAAATTAAGAAAACCGAAGTGAGCACACAGTGTGATAATAAGCAATCTGTGGCTGAAAAATATTTTCAATTACCTAAAACAGAGAAACGGGTGACGGTACAAATGCCCAAAGACTATGCAGCGAAAAGTCATCAAAGCAAACTCCAAACAGTTCCCAAGAAGCATGGAGGATTGGGGGAGTTTGACAGAGGGAATGTCCTGGGGAGGGAAGGAAAAAATCAGGACTCCTCCATGAGCAGTACAAAAGAAAGCAGGGTAATAGTTGAAAGAAAGCAAGAACATCTACAGGACCAGAGCGTACCAAGGTTAGTCCAACAAAAGATTATCGGTGAAAGCCTGGACTCACGGGTTCAGAATTTTCAGCAGACACAAACACAAACTTCTAGGATTGAGCATAAAGAACTGTCCCAACCTTACAGTGAGAAAAAATGTCTTAGAGACAAGGACAAACAACAAAAACAGGTCTCCTCTAACACTGACGATTCAAAGCAAGAGATAACACAAAAACAATCTTCATTTTCCTCTGTGAGAGAATCCCAGCAGGATGGAGAAAAATGTGCCATAAATATATTGGAATTCTTGAGAAAACGTGAAGAACTACAGCAGATTTTGTCTAGGGTAAAACAGTTTGAAGCAGATTCAAATAAAAGTGGCCTTAAAACATTTCAGACACTGTTAAATATTGCTCCGGTGTGGCTGATAAGTGAGGAGAAAAGAGAATATGGAGTTCGTGTTGCCATGGAGAATAATTTAGAAAAAGTCAAAGAAGAAATAATACATATTAAAACTCAAGCGGAGGAGATGCTCGTTCACTGTGAACACGTAATTCGAACAGCCATGATGGCTTCCCAAACAGGAAAGCAGAAAGATAAACCTACCAATCTTAATGAAATGCCACTGAAAGTGTCTAATGTTAATCTCAGCTCTCATAAAGGCACTGAACAGAAAGAAAGTAAATTTGTAGAAGAAAAATTAGCAACCCGCCAAGTAGCAACCCATTCTGAGGCAGCAACTCATAATCCTGCTAAAACATATCAGGAGGCTAAGGGGGACGATAGTAAGATGGCTCCTCCCTCTTTGAAAACTCGCCCACCATCACCAACTTTCATCACCATAGAATCCACTGCCCGCCGAGCAGAAACATCCACTAAGAGTGAGCTTTCTCAGTCCCCTAAAAATAACAGTTGTGTTGAACCTCTACCCAGAAGACCCATGGAGCATACATCTAGGCTTCCCAGAACAAGTACATCACCTTCCCCACCAAGGAGTCGTTCAGAACAACTTGTCAGACTCAAAGACACCACGGCCAGGTTAGCCAAAGGCACTATCCCTTGTTCACCAGGAACCCCGGTTCCAGTTGTCGAGAAGAGATCTGAAGTTGTCATGTCTCCAGCCACACTCCGCAGGCAAATCAAGATAGAAAGCCGTGGCGGGGACTCCCCACCCACCATCACAATACCTGTGAGTGTAAACCACCATGTCGTCAGTGGTTCCTTCAGAGAATCAGTAGACGCTCAAGAGGCAGTGAAGAAAACAGAAAAAACAGAGACGTACGTTCATAAAGACAAAAAGAATTCTGTCAGTAGCGCAATGCCAGAGACTGAAAGCTATGACGCAGTTGAAATCATCCGCAAGGTGGAAGGGCCCCACCTATCAGAACACAGGGAGAGATTTGAAGCCACCAATCAAACTGTTCAAATGGCTGAACATTTTCTGAATGGCCACGAAAATGAAGTAAACAGATGGTTTAGGGAATTTGAGAATGGCCCAGTTTTCGGAGCAAAGACAGAGAGAAGAGCTTATGCAAATGGCGAAATAAACCACAACATGAAACAAGAGAGTCATACGTTTTGCAAGGAGGAATTTGGATTAGAATCTTCTGAAACTGCTAATTTTACAGGCTTTTCTTACAGACATCCTAGAGAGCATCGAGCAAAAGCCCCTGCAACGCAGCCCAGGGTTCACTCTGAAGCCAGAGCTCTCAATGAGCATTTTTTGAGCGTGGATGCGTTCGACAGTCAGATTGTAGAGTCACAGGTAGCAACCTCATCATCACGGAGCTCAGAGGCAGGCAGATCTGGATTTGATTTTAAGCATGCCCCACCGACCTATGAAGATGTCATCGCTGGCCACATCCTAGATATTGCAGATTCGCCTACAAACCTCAGACGGAATTTTCAAAAGACATGGCAGGAGAGTGAAAGAGTTTTTAAGAGCGTGGGATATGAAACCTCGGATGCACATGCGACAGAAATGAGCAGGGCCTTCCAGGAGGAATCGGCCTTTTTGAGTG
Seq C2 exon
AAACTGTTGGTCCAAGACAAGGAAATCTGCATAATTTGTCAAAAGACGGTTTATCCAATGGAGTGCCTCGTAGCAGACCAGCAGAATTTTCATAAATCTTGCTTCAGATGCCACCATTGCAGCAGTAAACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000034258_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.867 A=0.518 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]