DreEX0085631 @ danRer10
Exon Skipping
Gene
ENSDARG00000071113 | xirp2a
Description
xin actin-binding repeat containing 2a [Source:ZFIN;Acc:ZDB-GENE-040108-7]
Coordinates
chr6:9938050-9950519:-
Coord C1 exon
chr6:9950416-9950519
Coord A exon
chr6:9940319-9949403
Coord C2 exon
chr6:9938050-9938183
Length
9085 bp
Sequences
Splice sites
3' ss Seq
TTCCTTTTATTACAACAAAGATT
3' ss Score
1.81
5' ss Seq
CCGGTAAAC
5' ss Score
4.81
Exon sequences
Seq C1 exon
TGATGGTAATTGGAGGAGAGAATTTGCCAAAAGTTTCTACTCAAGCCCTAAAACAGCAGCATGAAAAAAGTATTGAGGACGCCACTCCACCCAAACATATCAAG
Seq A exon
ATTGATCTTGATTACAACCAGTTTCCCTGGGCCCCAGTAAGTGTTTCCTCAAAGGCTACTGCCACAGGTAGCTATGAGGCCATGTCTGTCACCAAAACAATGCAAGAAGCCTGTACATCCTCTATGGCTTCCTCACAATATGAAGCTGTTGAGCACTTCTCCCAACCAATATCTGCCACACAACAGTTCCAAGAAACTTCCCAAGTCCCAGAACGCTGTCCTTCCCCTAAGCCAACAGACGCATCTACTTCATCCAAATACGCGGTCAATAAAGAGCAGTACTCTAAGCAGAGGAACCTCTATGAACTGAAGCGTCTCTATAAGCACATTCATCCAGAAGTGCGTAAAAACCTGGAACGTGACTTCTTTACTGATGTGACAGACACCGAGCAAACCTATGTGGACAGTGATGAGGAGGCAAGCAGAGATATTCAGCAAGCACGTTATGTTTTTGAAAACAGTGGAAGTACCAGCCCTGGCAAGTGCATCAGCCCAGAGAGAGAGTATATGGAATGGGATGAGATCCTAAAAGGTGAGGTGCAATCAATGCGCTGGATGTTTGAGAACAAGCCCCTGGATTCCATTAAGGATGTTACACCAGATGAGGACGAGGGGAAGAACATAGCCCAACAAGAAATCATTGCTGGAAAAGATGTGAAATACACTATGTGGATGTTTGAAACACAACCCATTGATGCTCTTGGTACAGAAAAATCAGACTCAGCAGAGCACGGTGGAAAACATGAGCTTGCAAGGGGAGATGTCCAGACTGCAACATGGCTGTTTGAGACACAACCGCTGGACACGCTTAACAGAATTTACCAAGAGGATGACCAAGAGACACAGGTCATGTATACTAAAGACATTGCTGGGGGTGATGTGAAAACTGCTAGATACTTGTTTGAAACACAGCACCTCGATGCACTTGGACACACCGAGACTATTGACGAGAATCACTTCCTGCAGTTAAAGTCTGAGCTTGAAGAAGTCAAGGGTGAGGTAAAGAAGACGACCAAGATGTTTGAGACACAGCCCATGTGTGTCATTCGCGGTGACTCTGGTGAGATGCTGGAGATTACCAAGGTCCGACGTGAAGAAACTGAGAAAGGTGATGTCAGAACATCGCGCTGGCTCTTTGAAACTCAACCTCTGGACCTGATTAGCAAAGATCCAAGCAAGGTGAAATTAATCTGTGGGGTCTCAATGGAGGAAAATTCCCAGGGTGGTGTCAACAGAGGAAGGTGGCTCTTTGAGACAAAGACACTTGATCAAATTAAAGAAGAGGAATGGGAAACCACAAAAACTCAAAAGGAAGAGATCCTAGGTGCAGATGTGAGAAGACATTGCATGATCTTTGAGACGCAGCCTATGGATAAACTTAAAGATGATACAAATGCAAGACCACTGGAGCCAGAGAACATCATGGGTGGTGATGTTACTTCTGCTAGGCAATTGTTTGAAACGGTGCCAATGGAAGATCTGAAAGAGTTACCTGAAGTTGGCAAGCTACAAAAGATGGTGGCTTCAGAAGAAGAGAAAGGTGATGTAAGACACCAGAAGTGGGTATTTGAAAGTAAACCTCTTGAACAGATCAGAGAGGAGAGCAAAGAGATCACAAGGACCGTTAATCTAGAGGACCTTGAAAAGGGTGATGTTACAAATTACAAGGAAAGATTTGAGACCATGGACCTGAGCAAGTGCTTAGATGCACAAAAAATACACATAGAGGGTGTCACCAGCGGGTCAGTGAAATCAAATAAAGTGTTTTTTGAGTCAAAACCCTTGTATGCTGTGCAAGACAGCTCGGGACACTACCATGAGGTCAAAACTGTACGCAGAGAGGAGGTTGTGAAAGGTGATGTGAGAAGCTGCAAGTGGATGTTTGAAACCCGCCCCATCGATCAGTTTGATGAGAGCATCACTAAGTTTCAAATAATAAAGGGAATATCTAAAGAGGAAATTCAGTCAGGTGATGTTAAAACAGCCAAATGGCTGTTTGAAACCCAGCCTCTTGATGGCATTAAATACTTCAATTTAGAGGAAGAAGACAACAGAAAAAATGAGAGCATTGAGATTCAAAGAGGTGATGTTAAAACATGCAGATGGTTGTTTGAAACACAGCCAATGGATGTCCTGTATGAGAAAATAGAGACAAAGACAGAAGACACCACAGACATCCAGAAAGGAGATGTTAAAACCTGCACATGGCTTTTTGAAACTCAGACTCTTGACAGTATAAAGGATGAGTCTGAGACCATCTTGAAAACTTCCACAGTAAAGCAAGACGATGTGCAAGGTAAGGATGTACGTCTTGTACGTTTCCTATTTGAGACCGAAAACCTGGAAAACATCACAGACGACGAGGATCACAGTGGCTTTAAGCGAATAACTGAAATTGACATTAACTCTGGAGATGTGTCAAGGATGAAGTACATCTTTGAGAATCAGACATCTGATATCATGACTTCTACATCAGAAGAGACCATGCAAAAACTCAAATGCCATCAAACAGAGGACATTCAGAAAGGAAATGTTGTGAACTGTACCTGGATGTTTGAAAACCAATCCATTGATTCAATCAAGGCAAATTCTGAAGATTTCAAAGAGTCACGCACAGTTACAGATATTCAGGGAGGTAATGTTGATAAAGGTCGCTTCATTTTTGAGACATACTCATTAGATAAGATTCAGGAGGAGTCATCTGAAACTGAGATCAGCAAACTTCAAAGTATCATACACAAAGAGATTGAAAAGGGGGATGTAAAAAATTACACAATGATGTTTGAGACCCAGCCCCTATATGCTATCAAGGACAAAGAGGGGCACTATCATGAGGTCACTACAGTCACAAAGGAAGAAATTCTGCGAGGAGATGTAGTTGGGGCAAGGTGGTTGTTTGAGACAAAGCCCATTGACTCCATTAAAGACACAGACGAGGTTTATGTTATCAAAGCTGTAACTCAAGAAGATATCCAAAAAGGTGATGTCAGCACGGCTAGGTGGAGGTTTGAAACTCAACCTTTAGATGAGATTGCAGAGGATATGAAAGTTGCTGTTAAAACTGTAGCAGACATCCAGGGGGGAGATGTGAAAACAAACAAACAGCGCTTTGAAACTGATGACCTATCAGAGAAATACGTGAGAACTGTTAGTGTCAGTGAGATTCAAAGAGGTAACGTGAGAAGCTCCACATGGATGTTTGAAACTCGCACCATTGACAAGATCAATGCTGAAGGTTCTGAGTATGAAGGAATGGAGAAGGTGATGCGTGAAGAAGTGGTAAAAGGTGATGTTAAGCAGTCTGTGTGGCTCTTTGAAAAAGAACCACTTGATCGTATCAAGGATGTCGATGACACAGAGACTGTAATTTCCCGGGAGGAAATCCCAAAAGCTGATGTGAAGACAACAACATGGTTGTTTGAAACCACCCCTCTAACAGAGTTTAATGAGAGCAGCATGGAAAGAACAGAGATTGTCGGTAAGAGCATCAAGACAACCCTAGAAGAGCTATTTTCTCAGAAAATGGTTGATTCACAAGGCATTCTAATTGAGGCAGATGAGATTGGCGATGTCAGAATGGCTAAATACAAACTCCTCAACCAGGACACTCCAGAAATCCAAAGAGAGGAGGTTATACATGGAGACCTCAACAATATTATGATGAACCTGCTCAATAGACGTGAGACAACAGAGAGAGGAATCACTATAAATATGCAGGAAAGAGGAAATATCAACTCAACCGTCCAACAGCTATTTAATCAGGATAAGAGTGGTAATGTTGAGAAAGAGGAAATTATCAGAGGAGATATCCAAGAGGCAATTAATAACTTGCTTAAGCAAGAAGGGTCTTCCAAACGGGGCATCCTGATTCAAGAAGATGAGAAAGGAGATGTGAGAATGACAATATACTCACTTCTTAATAAAGAAACAGAGAGCAGTGTTGAGAAAGAGGATATAATTAGTGGAAATATTCGTGGAACGATGCATAGGCTACTAGGTAATACTGATGCAAAGGACCCATCTACTAAGATAACTGTGGCAGAAGCGGAGAGAGGAAATGTCAGTTTTTATTCTACCTGTATTGAGTCTGGGGCAATGGACTACCTCAAGCAACTTCAGGTGGGGGCTGATGAAATTGTTGAGGAAAAAGTGAAAGAACAAATAATTGGAGGGGATGTAGAACATACAAAACAGATTCTAAGAAAGAGCCAGCAAATAATAGGACGAACTGTTGCTGAAGATGATATTGTACCAGGTGATGTAAATAACACAGTCCAGGTGTTTATGATGGAACCTGTACTCTCCCTGCATAACTTGCAGAAAGAGGAGATAGTAAAGGGAGACTTGAGAGCAGCTCTTGACTCTCTCACGCAAGCTGTTAACCAATGTGTAGTCATTGAAAAAGAGGACATAGTCAAAGGAGATATCAACACAACACTTAGGTCTCTCGAGGAGGCTCAAAACCAGTCTAAAGGAATTGAAAAACCTGAGATTGTGCCTGGTGACATTAGGGGTGCATTAGAATCTCTTGAAAAATCGACATCTGCAAAGACTGAGGTAATTATTGAAGATTTGGTGCCAGGGGATATTAAAGGTACTCTGAAATCCCTGGAGGAGGCAAAGCAGGCAGTAAAAGAGGTTGAGAAGGAGGAAATAGTTAAAGGTGATATTCAGACTGCTTTACTTTGTCTTCAAGAAGCTTCAACTGAAAAGAAGGTTTTTCAGCACCAAGTAAGTGAACAAGGTGATGTGAAAGGTACAATTCAGCTCTTACTGGAGCCAACTTCATCCACCCGTATGCACAGAAGGCCAAGCACAGAGGGTGATGTAAAATCCTCTATTAAATCCCTGTATGAGCAGGAGCAAGTAGAAGTTGAGAAAGAGGAGGTAATTAAGGGAGACGTTCAGGGAACAATTAAATCCCTGATGAAAAAGAAAGAGCAATCAAGCTACAAATCAAAAATGAACCCTCATAAGAAAGCTAAAGTTACAATTAAGAACCCAGTCCCCTCTCAACAAGCATGCCGTGAGTGCCCAGCTGGACCTAAAGCTGAGGAAAAGCCAACAAATCCACCTCCAGTGAAAAACATGCAGCAGAGCAGCACAAAAAAGACATCAGACATCAAATCTTCAGAAAGTCAGACTTCTGAGGAGTATAGTTCTACTACTAAGCAGATGAGCACTGCTGCTAATTTACAAGTGTCTTCTCAAAGCTCACAAAAAATGAATGTAAAAGAGCAACATATTAAACAAAAGCAGAACACTCCTAGTCCAGTGCTAATAAAGAAAAAGAATCTTGGAGGTCAAACAAGTGAGAGGAAATCTGAAAATGCAGCTATGTCTTCAGCAACAAGTGCATCAGCATCAGTGGAGGCATCACAAACTAATATTAGCATGAAAAAAACTGAAGAGACAAAGACAGTCACACAAGTTCAGACTACAATGACAACAGAGAGCACTACCATAAGCCAGAAGCAAAACATCAAGAATTTAAAATCAGAAAAAAATGTTAAGAGCCTTAACCGCAATCTAAGTCCTAAAGGAATGATAAAAAAGACAAAACCACAGCCAGAGATTCACTTTCCACCACCTCCGAGTTCCCCTCCACCCCCCTCTGAATCAGAGCTCTCTCTGCCTCCTCCTCCCTCGCCAGTGGCAGAAAGTGAGGTCCAGCCACCCCTCTTACCACGGCCTCCTCTGGCTATGAGACAGGACAGTGACCTTCCCCCTCCACCTCCCCCACCTCCTATCATGGAGACAGACACAGAATTCTTCCCACCACCTCCTCCACCCCAAGACTTCCTCCCTCCTCCTCCATCTCAACAGGAACTCAGCTCAGTTGCCCAACCTGCTAAGCCAAAAGGCAGAGCTCTGTTCAAGGTGCCCACACCTGAGCCTCCCAAGCAGCCAATGCCCAAAACATTTAAATGGCAGAAAAAACAAACATCACCTACTCCACCACCACCTCCTCCTCCATCAGTTGCTGAGCAGAGTGAAACAATTGCATCAGGTACAACCACATTTACAGAAACTACAGAGAACATCAGCAAGCAAAAGGAAATGTTTAAAAAAACCGAGCCTCCAGCTCCCCTTAATACTAAAACTTCATCAGCAATACCTGTGCTTCAAGCAGCAGCTGAGGAACCACCACGCCCCAAAAAAGCATTTGTTCCACCAATTAAGCTCCCACCTCCTCCTGACCCTGCTTCTCCAAAACCAAGGCCTTATGCAAGTAAATTTAAAACCCCACTCATGCTTGCAGAGGAGAGATATCGCAAACAAAGGGAGGAGGCTGAAAAAAACCAGGGAGAAAGTACTCCCACCTCACCCCCACCTACTAAACTATTTAATGACAGAGAAATAAAGACTGGAGCAGAGTCAATCACACAGAAACCTGAACAGACCCAAGTTACTATTGAGACACAGCAAGAAACGCGTAAAGAACCAGAGACAAAGCAAAAGCCAGCCATGCTACACAAAGAAATGACAGAAAAACCTGCCCCACCAAAAAGTCCACAGATTCCTCCAAAGCAAAAAACACCTGCAAATTTTCAGATAAGCAAACCTTCATTTCCCAAAGTTGCTAAAAAACCAACCACAGAATCCTTTAGTAATATATCCGATAAAAGGCAGACATCTACTACTGCTGCTATAGAAAAGAAAAGTCATACAGCCTCTGCAGTTCAATCACTTCCTGTTGCAGAGCAAGCTGAAAGTACAAAAGCTCACGCTGTAAAAGAAGAGAGCATCCAGGCCACTAAAAGTGTTCAAAATCAGATCACTACTTCTGCTCAAGTAGAGGAGATCAGAAGCGTAGAGGCATGTGTGGTTCAAGAAGTCAAAAAGGTTCCCCCTCAGTCCACAAAGATCCCAAAAGTGACCCCAAGCTTCAAGGTTAAAACATTTAAGGTACCTAAGGTAGAGAATGTGGAGAAAGAAGAAGAGAAAAAAGACATAGTTCAAACAGCTAGGACAGAGCAAACAGTCACAGAAACAGGAAAACATGTCTCTCAAGTGGATACAGCTCACGAGAGCCTTCAAAAATCCACCAGTGCTATGGAAAAAACTGAAGTGAAAGTTGAAAAAAGTGAGGGAATTACACAAACCAAGAAAGATGCCAAATTGGAGGTCCATCTAAAGAAACAAAAACAAGCTACAGTTAAGCAGCCGCCACCTGTTGCACCGAGACCATCAGTTGAGATACATCAAATACAGCCAGCAATATCTATAGAGGTGCATCAAGGACAAGGTCAGACATCTGTCATTCAGTCACATCATGCCGTGAGAGAGGAGCATGTTCAGGTCCATGAAGAAAGGAAGGTCACTCAGAGCACAGTTCAGCAACAGAGCATCCAACAAAAAAATAAATTCCAGATCAAGAAGCAGATAAAACCTCCAATGCGTCCTCCAAGCAGAGAGGAGGCCATAAAACAGTCAATACAGAAAGAGGATCAGACCAAATCAGAGAGTCTATCAATTACAACCGAAATTTCGTATGCACAAAAATGTGAAGAGATTCAAATATTGTTGAGTTGTATCAACGAGTTTGAAGGAGCCCCTGCAAAAATGAATCCAAAAGCGTTAAAGGCAATACTGAGTATCATTCCTGACTGGCTAGTTAGCTCTGAAGAGAAGGAAGATTTAAGCCAGGTTCAGTACAACAAGCAGAAAATGACAGAAGTCATAACCTATGTAAAGAACCTTGCCATTGCCAAACTGAATTTTTTAGAGGGAAACTTCTCTGTTTCAGAGACTGCAAAAAGTGAGTCAACACCAGAAAAGAAAATAGTAGGTGGAGCCACACAAAAAATATCCAAGATAACTATTGGCTCATCAAAAATTGAGACTCAGAAGAAAGTAGTGGAGGAGAAAAAAACAGAATGTCAGAGTAATTCAAGAGTAGCAGAGCTCAAAATGCCACCCGAGCTAAGAATGCGGACACCATCACCAACGTTCATATGCATTGAGTCTGCCAAGAGGACTGACTCCCCTCTTAGAGTAACTCCGTCACCCCCTCCCTCTTACAGGACAGGTGCTACACCAACACCTCCACCTCGGTGGTCTGAAACACCAACACGAATGTACCTATCCACACCGTCCCCCACAATGAGTCGCTCTGAGAAGCTAGCTAAACTAAGAGATACCACAGCCAAACTCTCACAAGGCATGACCCCACCACCCATGCCTTTGCCAGAGTACATGATGAAGGTCCAGACAGATTTGGAGGGGTCGCGCTCATCCAGTTGTTCAGAGATAGCCCTTGAGAGTCATATGATGGAATCATCCCTCATAGACGTCACAGATATCCATGGAGACTCCATGATGACTGTGAAAGACAAGCGTGAATTCTTTGAAGAGGCTCAGAAAGCAGACGTCTGTCGTACCTATTTACGCAAGGATCCAATTGACATCCCAGAGCGTCTTGGACCAGATACAGATGATAATGAGCCAGAGCTCCCGAGATCCATAGATGCACATGAGAGATTGTTAGAGGACTTGCCCAGGGTTGATCTGTCGAAGCTTGTGAACAAATTTGAGTCCCCCCAGCCAAAAGTTTACATTCGGAAGGACCCCATTGTGATTAACGAGAGACTTGGAAGTGACACAGAAGATGCTGAACCTGAGAAGAAGGCATCCTTGGTGGAGGACATGCCAAGCTTTGATATTAAGGCCCTCAAGAATGTCTTTGAAATGGGTGAGCAAGCCCATCAGTATCTAAGAGATGAGAGGAAAAATCTTGAAAAACAAGAGGAAGCACCTGAAGGATTCTCTGAGACACAGTCTGTAACGGAGCACTTCTCCTCTGTAGATGAATTTGGGAACAGTGTAACAGGCTCAATGAATCAAACAACCTCCCACTCTCAGAGTGTGACAACCCGTGGTGATCCACCCACTTATGCAGATGTAGTAAAAGGGGCTGTTCCTGTCCTAGACGTTCCACCAGAGGCCTCTGCTGAAGAGTTACTAAAGAGCTTCCAGCAGACATGGGCAGAGAGTGAAAACGTCTTTAAAAACCTGGGCTTCACTGTGTCGGAACAACACAGATCACAGACTGTTTCACGCCAGCACCAGTCTGTTGTCACCG
Seq C2 exon
AAAGTACGGGTGCCAGAGTCCGAACTGTGTCAGGTATGTCGGAAGAGGGTGTATCCCATGGAGTCTCTCATAGCAGACAAGCAAAACTTCCATAAAACCTGTTTTAGATGTGCCCACTGCAACAGCCAGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000071113_MULTIEX1-3/3=2-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.714 A=0.523 C2=0.434
Domain overlap (PFAM):
C1:
NO
A:
PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5),PF080437=Xin=WD(100=0.5)
C2:
PF0041217=LIM=PU(61.4=77.8)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]