BtaEX0040678 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016735 | ZBTB48
Description
zinc finger and BTB domain containing 48 [Source:HGNC Symbol;Acc:HGNC:4930]
Coordinates
chr16:47663992-47669187:-
Coord C1 exon
chr16:47669102-47669187
Coord A exon
chr16:47666882-47667123
Coord C2 exon
chr16:47663992-47664103
Length
242 bp
Sequences
Splice sites
3' ss Seq
TGCTGCCTCTTCTGCTCTAGTGG
3' ss Score
8.09
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
Exon sequences
Seq C1 exon
AGGCCGGCGCGCCCTGACGTCACGTCCGGCGGCGGCGACGGCGGCGTCTCTGCACTTTCGCCGGGCACGTACGGCCGGGGGAGTTG
Seq A exon
TGGGAGGTGGTGGTTCAAGTTGAGGACGACGGGGATGGCGATTATGATTCTGAAACTGAGACTGTGCCAACCAAGAGGAAAGCAAACGTAATCAGAAAGCCTTGTGCTGCTGAGCCGGCCCGGAGCGTAGGTTCCCTGGCAGCCGAGCCTGCTGAGAACAGAAAAGGTACAGCGGTGCCAGTTGAATGCCCCACATGTCATAAAAAGTTCCTCAGCAAATATTACCTAAAAGTCCACAACAG
Seq C2 exon
GAAACACACTGGGGAGAAACCCTTTGAGTGTGCCAAATGTGGGAAGTGTTACTTCCGGAAGGAGAACCTCCTGGAGCATGAAGCCCGGAACTGCATGAACCGCTCAGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016735_MULTIEX1-2/2=C1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.519 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF134651=zf-H2C2_2=PU(24.0=7.4)
C2:
PF134651=zf-H2C2_2=PD(72.0=47.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCGTCTCTGCACTTTCG
R:
TGTTCTGAGCGGTTCATGCAG
Band lengths:
156-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development