DreEX6080666 @ danRer10
Exon Skipping
Gene
ENSDARG00000039263 | zbtb48
Description
zinc finger and BTB domain containing 48 [Source:ZFIN;Acc:ZDB-GENE-030131-4450]
Coordinates
chr23:25022515-25025723:-
Coord C1 exon
chr23:25025001-25025723
Coord A exon
chr23:25023844-25024145
Coord C2 exon
chr23:25022515-25022626
Length
302 bp
Sequences
Splice sites
3' ss Seq
GTTTCACTCTCTGTTTTCAGGTG
3' ss Score
12.39
5' ss Seq
CAGGTACAT
5' ss Score
7.79
Exon sequences
Seq C1 exon
ATGGACTCGAGCTACTGCTGAATTTCTTCTACACTGGTGATCTCCAGCTAGACGACAGCAATCTGGAAAAAGTCCAAAATGCAGCCAGCGGATTATCGGTGCCTGTTTTTCTTATACCCTGCCAGGGTATAAAAACTCCTGACCTGAATGAAGGTGATCCATCAAAACCACTGCTTTCAGAGCCTCAGCCTGATCAGACTCCGAATAAAAAGACTAGATCTGGACAGAGGACCAAAAATAAAGCTGATGCATTTAAGTTGAGTACAGCAAGCGATGATGAGCCTCCTGCATTAAAGTCTACTACTGTCACACGTTCTGGAAGACGTGTAAAAGGGCCCAGTCGACTGGTTGGTGAAAGTCAAATTTCTGTTGTTACCAGACTAGGAGTGGGAAGGAGAAAAGCATCATTTGTAGAAGACAAAGAGCAGGAGACTGGAGCTACTGAAGATGGAGATCATCCCAGACATGAGGATGCAAGTGAGACTACCCAGACTACTGAG
Seq A exon
GTGGATATATCTGTTGATGACCAAAATGATGACGATGATGATGTTGAGGATGCTGCCAATAATGACGATGACAGTGACAGAGGTGGAAGTGTGGATATTATTATTGAGGGAACTGATGAAGAGTATGTGCCTCATGATTCACCTTGCTCAAGCACAAAGACTCCACGGGGAAAACGAAAAGAGAAAAGTAGCAATAAAAAGAATGGGGAAGGAACGTCAAAAGACAGCAAGAAAGGGGCCGTCCAGTGTCCAACGTGTCACAAAACGTTTCTCAGCAAATATTACCTCAAAGTACACAACAG
Seq C2 exon
GAGACACACTGGAGAAAAGCCGTTTAAATGTGGCAAATGTGGGAAGTGCTACTTTAGAAAGGAAAACCTGCTGGAGCACGAAGCCAGAAACTGTCTGACCAGAACAGAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000039263-'3-2,'3-1,5-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.523 A=0.743 C2=0.000
Domain overlap (PFAM):
C1:
PF0065126=BTB=WD(100=42.7),PF041477=Nop14=PU(47.2=39.0)
A:
PF041477=Nop14=FE(50.3=100),PF134651=zf-H2C2_2=PU(24.0=5.9)
C2:
PF041477=Nop14=PD(1.5=7.9),PF134651=zf-H2C2_2=PD(72.0=47.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAGAGCCTCAGCCTGATCA
R:
ACGGCTTTTCTCCAGTGTGTC
Band lengths:
348-650
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]