RnoEX6024639 @ rn6
Exon Skipping
Gene
ENSRNOG00000009595 | Zbtb48
Description
zinc finger and BTB domain containing 48 [Source:RGD Symbol;Acc:1311581]
Coordinates
chr5:169194778-169199528:-
Coord C1 exon
chr5:169198857-169199528
Coord A exon
chr5:169198246-169198493
Coord C2 exon
chr5:169194778-169194889
Length
248 bp
Sequences
Splice sites
3' ss Seq
TGCTGCCTCCTCTACTCTAGTGG
3' ss Score
7.06
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
ATGGCTCAGGGGGCAGTGTTGTCCTCCCTGCAGGTTTTGCTGAGATTTTTGGCCTCCTGCTGGACTTTTTCTACACTGGCCACCTCGCCCTCACCTCAGGGAACAGGGATCAGGTGCTCTTGGCAGCCAAAGAGTTGAGGGTGCCTGAGGCTGTGGAGCTATGTCAGAGCTTCCAGCCCCAAACCTCAGCGGGACAGGCACAGAGTGGACCGGGCCAAGTTTCCTCCCAGGATGTGAAAAGCCACCTCAAGGAGCCAACAGACTTGGATGAGGAGGAAGTTTTCAGGACTCTGAGCCTGGCCTCTGTGGATCAGGAGCCCAGAGACGGTGAGCAGCCCCAGCTCAGCACACCTGCCCAGAGCAGCCCGGCCTTCCTCTGTGGGAAACTCAAGCAGGTGTTGAAGCCTTCTCCCCCAGCGGACAAAGAGTCTGAGGACAGCAAAGAGCCCCCAAGGCCTTTTGAAGCTGAAGGTGCCCCACTGCAGGGCGAGAGCAATGAG
Seq A exon
TGGGAAGTGGTGGTTCAAGTTGAGGACGACAGGGATGGTGATGGCGATTATGCATCTGAGCCTGAGACTGTGCTGACCAGGAGGAAGTCAAAAGTGATTAGAAAGCCGTGTGCGGCAGAGCCAGCCCTGGGTGCAGGCTCCCTCACAGCCGAGCCCACCGAGGGCAGAAAAGGTGCAGCAGTTCCGGTCGAATGTCCCACATGTCATAAGAAGTTCCTCAGCAAATACTACCTAAAAGTCCACAACAG
Seq C2 exon
GAAACACACTGGGGAGAAACCCTTCGAGTGTCCCAAATGTGGGAAGTGTTACTTTCGCAAGGAGAACCTCTTGGAGCATGAAGCCCGGAATTGCATGAACCGCTCAGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009595-'4-3,'4-1,5-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.471 A=0.578 C2=0.000
Domain overlap (PFAM):
C1:
PF0065126=BTB=WD(100=46.6)
A:
PF134651=zf-H2C2_2=PU(24.0=7.2)
C2:
PF134651=zf-H2C2_2=PD(72.0=47.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTCAAGGAGCCAACAGACT
R:
TGGGACACTCGAAGGGTTTCT
Band lengths:
292-540
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]