BtaEX0040956 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000755 | ZFR2
Description
zinc finger RNA binding protein 2 [Source:HGNC Symbol;Acc:HGNC:29189]
Coordinates
chr7:21386173-21389875:+
Coord C1 exon
chr7:21386173-21386358
Coord A exon
chr7:21388061-21388301
Coord C2 exon
chr7:21389715-21389875
Length
241 bp
Sequences
Splice sites
3' ss Seq
ATGGGGCTGGTCTGTTCCAGGTC
3' ss Score
8.43
5' ss Seq
TGGGTACGG
5' ss Score
6.54
Exon sequences
Seq C1 exon
CAGACGTACCGCGAGCACCTGGAAGGGCAGAAGCACAAGAAGAAAGAGGCAGCCCAGAAGATGGGCGTCCAGCCCAACGGCAGCCCGCGGGGGGTGCAGGCGCAGCTGCGCTGCGACCTCTGTGCCGTGTCCTGCACCGGGGCAGAGGCCTACGCTGCCCACATCCGGGGGGCCAAGCACCAGAAG
Seq A exon
GTCTTCAAGCTGCACACCAAACTGGGGAAGCCCATCCCCACCATAGACCCTGCGCCGGCCGACCCCGGCTTGGCCCAGGCCCCCAGCACCAGCCAGCCGGCCTCCATCCCCGTCACCGTCACCGCAGAGAGCGCCCCCGCAGCCTCAGCCAAGCCCGCGGCCCCCGCCAGCCCCAGCGTGTGTGCCCCGAGCAGGCCACCACCGCCCAGGAGACCGGCCACCTCGAAGGCCTCGCGTGTGG
Seq C2 exon
GGCCTCCTGCGCTGCCAGCAACTGACTGCAGAGCCCCCCACGGGAAACCAGCGACCCCCAGATCAGAGCGGCCCGGGGAGCCGTCCGCCCGAGGAGGCTCTACAGAAGCTTCTGGAAGCAGCTGTGAGGGGCAGCCAGTGGGCCCAGGCTACGTGGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000755_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.516 A=0.978 C2=0.778
Domain overlap (PFAM):
C1:
PF128742=zf-met=PD(42.3=17.7),PF128742=zf-met=WD(100=40.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCACCTGGAAGGGCAGAAG
R:
CCTCACAGCTGCTTCCAGAAG
Band lengths:
303-544
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development