DreEX0086440 @ danRer10
Exon Skipping
Gene
ENSDARG00000071683 | zfr2
Description
zinc finger RNA binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-070705-184]
Coordinates
chr22:4691229-4699803:-
Coord C1 exon
chr22:4699621-4699803
Coord A exon
chr22:4697008-4697239
Coord C2 exon
chr22:4691229-4691377
Length
232 bp
Sequences
Splice sites
3' ss Seq
TGTGAAATCTTTTTACGCAGGTG
3' ss Score
7.38
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
ACTTATCGGGAACATCTGGAAGGGCAGAAGCACAAGAAGAAAGAGGCGGCTCAGAAGAGCGGCAGTCAGGTGACCAATGGCCCCCGTGGCGTCCAGACACAGTTGCGCTGTGAACTGTGCGACGTCTCGTGCACCGGCGCCGACGCTTACGCTGCGCACATTCGCGGATCCAAACACCAAAAG
Seq A exon
GTGGTGAAGCTGCACACCAAGCTTGGCAAACCCATCCCTTCCACGGAGCCGGTTTTAGTGAGCTCCACTCCTGCTGCAATGACGACAACCACTAGTAAACCAGCGGCGTCGACTTCTTCCACTCCTACATCAGCAGCGCAGAAGATCCAGACAGCGGCTCCACCCAAACCTGCGGCAGCACCTGTCAAAAAACCACCGCCTGCTGTTTCTGCTGCTAAAGCTCCTGCTGTTG
Seq C2 exon
TCAGTAAACCGTCCACATCGACTGTGGTGAAAATGGAGGAGGTGAAGCCGCCTGTGGTCAAAACAGACCCTTCCAGCGATGATGAGGATGCAGACGCTACAGGACCTCAAGGAGACATCCAGCCTGTGGGACACGATTATGTCGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000071683-'13-9,'13-8,15-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.613 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF128742=zf-met=PD(44.0=17.7),PF128742=zf-met=WD(100=40.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACATCTGGAAGGGCAGAAGC
R:
ACAGGCTGGATGTCTCCTTGA
Band lengths:
300-532
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]