HsaEX0072704 @ hg19
Exon Skipping
Gene
ENSG00000105278 | ZFR2
Description
zinc finger RNA binding protein 2 [Source:HGNC Symbol;Acc:29189]
Coordinates
chr19:3823244-3827651:-
Coord C1 exon
chr19:3827469-3827651
Coord A exon
chr19:3825228-3825405
Coord C2 exon
chr19:3823244-3823401
Length
178 bp
Sequences
Splice sites
3' ss Seq
CCCGGCTCTGTCTGTTGCAGGTC
3' ss Score
12.55
5' ss Seq
AGGGTACGT
5' ss Score
9.15
Exon sequences
Seq C1 exon
ACCTACCGGGAACATCTGGGAGGGCAGAAGCACAGAAAGAAGGAGGCGGCCCAGAAGACAGGCGTGCAGCCCAACGGGAGCCCGCGCGGGGTGCAGGCGCAGCTGCATTGCGACCTGTGCGCCGTGTCCTGCACCGGGGCGGACGCCTACGCGGCCCACATCCGGGGATCCAAGCACCAGAAG
Seq A exon
GTCTTCAAGCTGCACGCCAAACTGGGGAAGCCCATTCCCACCCTCGAGCCTGCACTGGCCACAGAGAGCCCCCCCGGGGCAGAGGCCAAGCCCACGTCCCCCACTGGCCCCAGCGTGTGTGCCTCGAGCAGGCCAGCGCTGGCCAAGAGACCCGTGGCCTCGAAGGCCTTATGCGAGG
Seq C2 exon
GGCCTCCTGAGCCACAGGCAGCAGGCTGCAGACCCCAGTGGGGGAAACCAGCCCAACCTAAATTAGAGGGTCCCGGAGCACCTACCCAAGGAGGCTCAAAGGAAGCTCCCGCGGGCTGCTCTGATGCGCAGCCGGTGGGCCCGGAATATGTGGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105278-'8-9,'8-8,9-9
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.612 A=0.883 C2=0.953
Domain overlap (PFAM):
C1:
PF128742=zf-met=PD(40.0=16.4),PF128742=zf-met=WD(100=41.0)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACATCTGGGAGGGCAGAAG
R:
TGCTCCGGGACCCTCTAATTT
Band lengths:
254-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)