RnoEX0101819 @ rn6
Exon Skipping
Gene
ENSRNOG00000020416 | Zfr2
Description
zinc finger RNA binding protein 2 [Source:RGD Symbol;Acc:1304737]
Coordinates
chr7:11343042-11344771:-
Coord C1 exon
chr7:11344592-11344771
Coord A exon
chr7:11343847-11344033
Coord C2 exon
chr7:11343042-11343187
Length
187 bp
Sequences
Splice sites
3' ss Seq
TGCTGTGGGGTCCATTGCAGGTC
3' ss Score
8.44
5' ss Seq
AGGGTACAG
5' ss Score
3.14
Exon sequences
Seq C1 exon
ACCTATCGGGACCACCTGGAAGGGCAGAAGCACCGGAAGAAGCAGGCAGCTCAGAGGACCCGCACGCAGCCCAGTGGAGGTCCTAGAGGATCCCAGAGCCTTCACTGTGGCCTGTGTGCTGTGTCCTGCACGGGGGCGGACGCCTACGCTGCCCACATGAGGGGAGCCAGGCACCAGAAG
Seq A exon
GTCTTCAAGTTGCACACCAGGCTAGGGAAGCCCATTCCCTCTGAGCCCACACCACGGAGTGTCACCTACACCCGAGGTTCGGACAGCACCCCTGAGACCTCAGTCAAGCATGAAGCTCATGCCCGTCACAGCTCACACACCCAAGGCCGGCCAGCACCAGCCAAGGGACCAGCAGCCTCACGCAAGG
Seq C2 exon
GGTCACCTGAGCTACAGACAGTGCACAGCTGGCCTGGAGACAGGCGGCCATCACACTGCAAGGCAGAGGCCACCAGGGGAGGCTCCGGGGAAGCTTCGGGGATCTCGGGAGACACGGAGCCAGTAGGCACAGAGTACGTCGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020416_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.717 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF128742=zf-met=PD(40.0=16.7),PF128742=zf-met=WD(100=41.7)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGGTCCTAGAGGATCCCA
R:
GCTCGACGTACTCTGTGCCTA
Band lengths:
250-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]