HsaEX6091912 @ hg19
Exon Skipping
Gene
ENSG00000105278 | ZFR2
Description
zinc finger RNA binding protein 2 [Source:HGNC Symbol;Acc:29189]
Coordinates
chr19:3822079-3825405:-
Coord C1 exon
chr19:3825228-3825405
Coord A exon
chr19:3823244-3823401
Coord C2 exon
chr19:3822079-3822198
Length
158 bp
Sequences
Splice sites
3' ss Seq
GACATGGTTTTTCCCCTCAGGGC
3' ss Score
10.16
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
GTCTTCAAGCTGCACGCCAAACTGGGGAAGCCCATTCCCACCCTCGAGCCTGCACTGGCCACAGAGAGCCCCCCCGGGGCAGAGGCCAAGCCCACGTCCCCCACTGGCCCCAGCGTGTGTGCCTCGAGCAGGCCAGCGCTGGCCAAGAGACCCGTGGCCTCGAAGGCCTTATGCGAGG
Seq A exon
GGCCTCCTGAGCCACAGGCAGCAGGCTGCAGACCCCAGTGGGGGAAACCAGCCCAACCTAAATTAGAGGGTCCCGGAGCACCTACCCAAGGAGGCTCAAAGGAAGCTCCCGCGGGCTGCTCTGATGCGCAGCCGGTGGGCCCGGAATATGTGGAGGAG
Seq C2 exon
GTGTTCAGCGACGAAGGGCGAGTGCTTCGCTTCCACTGCAAGCTGTGCGAGTGCAGTTTCAACGACCTTAACGCGAAGGACCTGCACGTGAGGGGGCGGCGGCACCGGCTGCAGTACCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105278-'9-10,'9-9,10-10=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.883 A=0.953 C2=0.300
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF121713=zf-C2H2_jaz=WD(100=67.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCAAGCTGCACGCCAAAC
R:
GTCCTTCGCGTTAAGGTCGTT
Band lengths:
257-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)