BtaEX6039079 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000755 | ZFR2
Description
zinc finger RNA binding protein 2 [Source:HGNC Symbol;Acc:HGNC:29189]
Coordinates
chr7:21388418-21390731:+
Coord C1 exon
chr7:21388418-21388465
Coord A exon
chr7:21389715-21389875
Coord C2 exon
chr7:21390612-21390731
Length
161 bp
Sequences
Splice sites
3' ss Seq
CATGAAGTTCTTCCCTCCAGGGC
3' ss Score
7.7
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GATTCCGGCCGGGTGGTGCCTCCTGGTGCCTTTGGTCCACCTGGGGAA
Seq A exon
GGCCTCCTGCGCTGCCAGCAACTGACTGCAGAGCCCCCCACGGGAAACCAGCGACCCCCAGATCAGAGCGGCCCGGGGAGCCGTCCGCCCGAGGAGGCTCTACAGAAGCTTCTGGAAGCAGCTGTGAGGGGCAGCCAGTGGGCCCAGGCTACGTGGAGGAG
Seq C2 exon
GTGTGCAACGAGGAGGGCCGGGTGATCCGCTTCCACTGCAAGCTGTGTGAGTGCAGCTTCAATGACCCCAACGCCAGGGACATGCACGTGCGGGGACGGCGGCACCGGCTGCAGTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000755-'10-11,'10-10,11-11=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.778 C2=0.375
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF128742=zf-met=WD(100=62.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGCCTCCTGGTGCCTTT
R:
CTTGTACTGCAGCCGGTG
Band lengths:
154-315
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]