RnoEX6030400 @ rn6
Exon Skipping
Gene
ENSRNOG00000020416 | Zfr2
Description
zinc finger RNA binding protein 2 [Source:RGD Symbol;Acc:1304737]
Coordinates
chr7:11342064-11344033:-
Coord C1 exon
chr7:11343847-11344033
Coord A exon
chr7:11343042-11343187
Coord C2 exon
chr7:11342064-11342183
Length
146 bp
Sequences
Splice sites
3' ss Seq
CCGACCCTGGTTTCTGGCAGGGT
3' ss Score
6.19
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GTCTTCAAGTTGCACACCAGGCTAGGGAAGCCCATTCCCTCTGAGCCCACACCACGGAGTGTCACCTACACCCGAGGTTCGGACAGCACCCCTGAGACCTCAGTCAAGCATGAAGCTCATGCCCGTCACAGCTCACACACCCAAGGCCGGCCAGCACCAGCCAAGGGACCAGCAGCCTCACGCAAGG
Seq A exon
GGTCACCTGAGCTACAGACAGTGCACAGCTGGCCTGGAGACAGGCGGCCATCACACTGCAAGGCAGAGGCCACCAGGGGAGGCTCCGGGGAAGCTTCGGGGATCTCGGGAGACACGGAGCCAGTAGGCACAGAGTACGTCGAGCAG
Seq C2 exon
GTGTGCAGCGAGGAGGGGAAGGTGATCCGCTTCCGATGCAAGCTCTGCGAATGCAGCTTCAATGATAGGAATGCCAGAGACATGCACCTGACGGGACGCCGGCACCGGCTGCAGTACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020416-'9-10,'9-7,12-10=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.425
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF128742=zf-met=WD(100=62.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCCCATTCCCTCTGAGC
R:
CAGGTGCATGTCTCTGGCATT
Band lengths:
251-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]