DreEX6097250 @ danRer10
Exon Skipping
Gene
ENSDARG00000071683 | zfr2
Description
zinc finger RNA binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-070705-184]
Coordinates
chr22:4690910-4697239:-
Coord C1 exon
chr22:4697008-4697239
Coord A exon
chr22:4691229-4691377
Coord C2 exon
chr22:4690910-4691029
Length
149 bp
Sequences
Splice sites
3' ss Seq
GTGTGAAATCTGTTTCTCAGTCA
3' ss Score
5.04
5' ss Seq
GAGGTGAAA
5' ss Score
2.91
Exon sequences
Seq C1 exon
GTGGTGAAGCTGCACACCAAGCTTGGCAAACCCATCCCTTCCACGGAGCCGGTTTTAGTGAGCTCCACTCCTGCTGCAATGACGACAACCACTAGTAAACCAGCGGCGTCGACTTCTTCCACTCCTACATCAGCAGCGCAGAAGATCCAGACAGCGGCTCCACCCAAACCTGCGGCAGCACCTGTCAAAAAACCACCGCCTGCTGTTTCTGCTGCTAAAGCTCCTGCTGTTG
Seq A exon
TCAGTAAACCGTCCACATCGACTGTGGTGAAAATGGAGGAGGTGAAGCCGCCTGTGGTCAAAACAGACCCTTCCAGCGATGATGAGGATGCAGACGCTACAGGACCTCAAGGAGACATCCAGCCTGTGGGACACGATTATGTCGAAGAG
Seq C2 exon
GTTCGTAATGATGATGGAAAGGTGATTCGCTTTCATTGTAAACTGTGTGAATGCAGCTTCAACGATCCCAACGCTAAAGACATGCATCTGAAGGGACGCAGACACAGACTGCAATACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000071683-'15-10,'15-9,16-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.481
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF128742=zf-met=WD(100=61.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCACTCCTGCTGCAATGAC
R:
TAGCGTTGGGATCGTTGAAGC
Band lengths:
246-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]