BtaEX6075787 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008414 | ZFR
Description
zinc finger RNA binding protein [Source:HGNC Symbol;Acc:HGNC:17277]
Coordinates
chr20:41311145-41317093:+
Coord C1 exon
chr20:41311145-41311436
Coord A exon
chr20:41315106-41315299
Coord C2 exon
chr20:41316974-41317093
Length
194 bp
Sequences
Splice sites
3' ss Seq
GTAATTCTTTTATGTTCTAGGTG
3' ss Score
10.3
5' ss Seq
GAGGTATTG
5' ss Score
7.44
Exon sequences
Seq C1 exon
GTGGTTAAATTACACACAAAACTTGGTAAACCCATTCCTTCAACAGAACCAAACGTTGTTAGCCAAGCTACTTCTTCAACAGCTGTATCTGCTTCAAAGCCAACTGCCTCTCCTTCAAGCATTGCAGCAAGCAATTGTACTGTGAATACTTCATCAATTGCAACTTCTTCAGTGAAAGGTCTTACAACTACAGGAAACTCGTCTCTTAATAGCACAGCCAACACTAAAGTATCAGCAGTGCCTGCAAATATGGCTGCCAAGAAAACATCTACACCCAAAATAAACTTTGTTG
Seq A exon
GTGGTAATAAGCTGCAGTCAACAGGAAATAAAACAGAAGACTTAAAAGGAACTGAATGTGTTAAAAACACCCCTGTCACTTCTGTACCAATTCCAGAAGTAAAGCCAGACACAGTGTCAGAACCAGTCACACCTGCGTCTCTTGCTGCTTTGCAGAGCGACGTGCAGCCAGTGGGCCATGATTATGTGGAGGAG
Seq C2 exon
GTACGAAATGATGAAGGAAAAGTGATTAGATTCCATTGCAAATTATGCGAGTGCAGCTTTAATGATCCCAATGCTAAGGAGATGCATTTAAAAGGACGAAGACACAGACTTCAATATAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008414-'6-12,'6-11,9-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.857 A=0.923 C2=0.375
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF128742=zf-met=WD(100=62.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCTCCTTCAAGCATTGCA
R:
GGATCATTAAAGCTGCACTCGC
Band lengths:
255-449
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]