HsaEX6097598 @ hg38
Exon Skipping
Gene
ENSG00000056097 | ZFR
Description
zinc finger RNA binding protein [Source:HGNC Symbol;Acc:HGNC:17277]
Coordinates
chr5:32397219-32403397:-
Coord C1 exon
chr5:32403106-32403397
Coord A exon
chr5:32400007-32400203
Coord C2 exon
chr5:32397219-32397338
Length
197 bp
Sequences
Splice sites
3' ss Seq
ACTTTTTGATACTTTTCTAGGTG
3' ss Score
10
5' ss Seq
GAGGTAATT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GTGGTTAAGTTACACACAAAACTTGGTAAACCCATTCCATCAACAGAACCAAATGTTGTTAGCCAAGCTACTTCTTCAACAGCTGTATCTGCTTCAAAGCCGACTGCCTCTCCTTCAAGCATTGCAGCAAACAATTGTACTGTGAATACGTCATCAGTTGCAACGTCTTCAATGAAGGGTCTTACGACTACAGGAAACTCGTCTCTTAATAGCACATCTAACACTAAAGTATCAGCAGTGCCTACAAATATGGCTGCCAAGAAAACATCTACCCCCAAAATAAATTTTGTTG
Seq A exon
GTGGTAATAAGCTGCAGTCAACAGGAAATAAAGCAGAAGACATAAAAGGAACCGAATGTGTTAAAAGTACTCCTGTCACTTCTGCTGTGCAGATTCCTGAAGTAAAGCAAGACACAGTGTCAGAACCAGTCACACCTGCATCTCTTGCTGCTTTACAGAGTGATGTGCAGCCAGTGGGCCATGATTATGTGGAAGAG
Seq C2 exon
GTACGAAATGATGAAGGAAAAGTAATTCGGTTCCATTGTAAATTATGCGAGTGCAGCTTTAATGATCCCAATGCTAAGGAGATGCACTTAAAAGGGCGAAGACACAGACTTCAATATAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000056097-'28-23,'28-21,30-23
Average complexity
S
Mappability confidence:
89%=100=75%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.949 A=0.848 C2=0.375
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF128742=zf-met=WD(100=62.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTCATCAGTTGCAACGTCT
R:
TGAAGTCTGTGTCTTCGCCCT
Band lengths:
258-455
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains