DreEX6012579 @ danRer10
Exon Skipping
Gene
ENSDARG00000027109 | zfr
Description
zinc finger RNA binding protein [Source:ZFIN;Acc:ZDB-GENE-030131-378]
Coordinates
chr5:40534210-40535004:-
Coord C1 exon
chr5:40534716-40535004
Coord A exon
chr5:40534422-40534615
Coord C2 exon
chr5:40534210-40534329
Length
194 bp
Sequences
Splice sites
3' ss Seq
TTTTTGCATGATCAATATAGGTG
3' ss Score
4.96
5' ss Seq
GAGGTAACA
5' ss Score
8.1
Exon sequences
Seq C1 exon
GTTGTAAAATTGCATACCAAGCTAGGAAAGCCGATCCCATCCACTGAGCCCAGTGTGGTTTCCCAATCTTCCACCTCCAGTACTGCAGCTCCGAATAAAACTTCCAGCTCCAACATCAACAGCTCCACAAGCACATCATCAAATGCTTCTTCCTCTGTTTCTGCCTCTTACTTAAAATCTGGCAGTATGGCTGCTTCTGCTGCACAGGGCAAGAGTTCAGGAGCCAACAGTGTCTCTGTCAACAGCTCCTCTATCAAGAAGGTCAACACACCCAAGATCAACTTCGTTG
Seq A exon
GTGGAAACAAGTTACAAACCACTGCTTCTAAAAGTGACGAATCCAAAGCTGATGCAGCTAAAACTGCACAGTCTGCTGCGTCTGCACCAGCAGCAGATGCAAAGAATGACATGCCTGACCCCATGTCACCTCAGTCAGCACTTGCAGCCCTGCAGAGTGACGTTCAGCCTGTCGGACATGACTATGTTGAAGAG
Seq C2 exon
GTTAGGAATGATGAAGGCAAGGTTATCCGGTTCCACTGCAAACTGTGTGAATGCAGTTTCAATGATCCCAATGCCAAGGAAATGCATTTGAAAGGAAGGAGACACCGACTGCAGTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000027109-'12-13,'12-12,13-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.856 A=0.954 C2=0.475
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF128742=zf-met=WD(100=62.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGTACTGCAGCTCCGAAT
R:
GTGGAACCGGATAACCTTGCC
Band lengths:
250-444
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]